SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene78025

Length: 341 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene78025
CGTCGTGACCTTGGCTGTCACTCATCTCAGCTACCTCTTCCGTTGTGCGTGGAGTTAAAGCCTTTGCCGTCGTTATTGCTGTCACTCAATATTCCAGAAGATAAAGTAGTAGGTATTGCAAACTTCTTCCTCAGTATTGGTGTTCCAGGAAGTTCCATTGAAATCTATCATCAACTTGATTCCTTGGGCAACTTGGAGGATAACAGCATTACTATTCCTCTGGTCCTATCAATCCCTGCTACTGTACTTCATTGACATCGAGGGAGCATTTGAAGGTTGTGATTAGCACTGTGCTGGGATCTGCAGCACCTCCTATGGTGGTCAATCTTGTTCGTGCTGTC

Ace file of the UniGene sp_v1.1_unigene78025

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	HAP6; HAP6 (HAPLESS 6); dolichyl-diphosphooligosaccharide-protein glycotransferase	-	-	4.0e-16	50%
FL-Next	tr=Dolichyl-diphosphooligosaccharide--protein glycosyltransferase, putative, expressed; Triticum aestivum (Wheat).	-	-	0.0	52%
Blast2go	protein	-	-	4.90794e-17	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to cold	GO:0009409	Biological Process	4.90794e-17	81%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	4.90794e-17	81%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	4.90794e-17	81%
Blast2go	plasma membrane	GO:0005886	Cellular Component	4.90794e-17	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ribophorin II	IPR008814	-	4.90794e-17	81%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8L9J3

Fln msg: Separated hits, possible frame ERROR between 80 and 88, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 338 aas, your sequence is shorter than subject: 113 - 688

Fln protein: S*PWLSLISATSSVVRGVKAFAVVIxxxxNIPEDKVVGIANFFLSIGVPGSSIEIYHQLDSLGNLEDNSITIPLVLSIPATVLH*HRGSI*RL*LALCWDLQHLLWWSILFVL

Protein Length: 114

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTCAGCTACCTCTTCCGTTGTGCGTGGAGTTAAAGCCTTTGCCGTCGTTATTGCxxxxxxxxxCAATATTCCAGAAGATAAAGTAGTAGGTATTGCAAACTTCTTCCTCAGTATTGGTGTTCCAGGAAGTTCCATTGAAATCTATCATCAACTTGATTCCTTGGGCAACTTGGAGGATAACAGCATTACTATTCCTCTGGTCCTATCAATCCCTGCTACTGTACTTCATTGACATCGAGGGAGCATTTGAAGGTTGTGATTAGCACTGTGCTGGGATCTGCAGCACCTCCTATGGTGGTCAATCTTGTTCGTGCTGTC

Fln Alignment:

sp_v1.1_unigene78025___ISATSSVVRGVKAFAVVIAxxxNIPEDKVVGIANFFLSIGVPGSSIEIYHQLDSLGNLEDNSITIPLVLSIPATVL
D8L9J3_______________ITTSASVVRGVTSFANVVSxxxNIPGEKILGLAKFFLGIGLPGSAKDCFNQIESLSLLENNRIFVPLILSLPSKVL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain