SustainPineDB

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Assembly info
Unigenes
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene77974

Length: 571 nt

UniGene Fasta

>sp_v1.1_unigene77974
GTTGAGTTGGGGGAAACATTATTTACCTGTGAGTTCGCCATGCCGTTCAGGGCTGTGAGTTCGCCATCCTCTTGGCGACACGCATGGATTTCGCCATAGACGCAGAGGTAAATAATGATCAAATATCCCAATTGAATTTAGGTTGATCGTTGATTTTGGGAATATTTCAGAGTTTTAATGTGGGTATTTTACGTTGGATTTAAGGCACAGACAACTGTTGTGGAGGCAGAGGTTGAGGCAGAGGTTAAAGGGACTCTAGATACTTTGAAGGCTTGTGCAAAGGCAAAATCTGTTCGCCGTGTAATATACACTTCCTCGATAAACGCAGCTTCTCCGCTGAATAACAATGGAAAATTCAGGGACTGCGTTGATGAATCCTGCTGGACCCCTGTCGATCTCATCAGGCGTGAAAAGCCACTTTTCTGGAGCAAGCAGCTCTTCAATATGGATCGGATCATAGCATTGAAGTGGTGACACTAGCGCCAGCCCTAGTTGCCGGACCACCTCTTACACCCACGCTTCCTGCCAGCATTGAAGAAACTTTAGGATTGATCACAGGGAGTCAAGAATG

Ace file of the UniGene sp_v1.1_unigene77974

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Anthocyanidin reductase n=1 Tax=Ginkgo biloba RepID=Q5XLY0_GINBI	-	-	3.0e-20	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Blast2go	nad-dependent epimerase dehydratase	-	-	5.79136e-20	68%

Source	InterPros	Term	Type	e value	Identity
Blast2go	3-beta hydroxysteroid dehydrogenase/isomerase	IPR002225	-	5.79136e-20	68%
Blast2go	NAD(P)-binding domain	IPR016040	-	5.79136e-20	68%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVF9

Fln msg: Warning!, your query overlaps and the subject is separated, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 113 aas, your sequence is shorter than subject: 190 - 344

Fln protein: VELGETLFTCEFAMPFRAVSSPSSWRHAWISP*TQR*IMIKYPN*I*VDR*FWEYFRVLMWVFYVGFKAQTTVVEAEVEAEVKGTLDTLKACAKAKSVRRVIYTSSINAASPLNNNGKFRDCVDESCWTPVDLIRREKxxxxxxAALQYGSDHSIEVVTLAPALVAGPPLTPTLPASIEETLGLITGSQE

Protein Length: 191

Fln nts: GTTGAGTTGGGGGAAACATTATTTACCTGTGAGTTCGCCATGCCGTTCAGGGCTGTGAGTTCGCCATCCTCTTGGCGACACGCATGGATTTCGCCATAGACGCAGAGGTAAATAATGATCAAATATCCCAATTGAATTTAGGTTGATCGTTGATTTTGGGAATATTTCAGAGTTTTAATGTGGGTATTTTACGTTGGATTTAAGGCACAGACAACTGTTGTGGAGGCAGAGGTTGAGGCAGAGGTTAAAGGGACTCTAGATACTTTGAAGGCTTGTGCAAAGGCAAAATCTGTTCGCCGTGTAATATACACTTCCTCGATAAACGCAGCTTCTCCGCTGAATAACAATGGAAAATTCAGGGACTGCGTTGATGAATCCTGCTGGACCCCTGTCGATCTCATCAGGCGTGAAAAGxxxxxxxxxxxxxxxxxxGCAGCTCTTCAATATGGATCGGATCATAGCATTGAAGTGGTGACACTAGCGCCAGCCCTAGTTGCCGGACCACCTCTTACACCCACGCTTCCTGCCAGCATTGAAGAAACTTTAGGATTGATCACAGGGAGTCAAGAATG

Fln Alignment:

sp_v1.1_unigene77974___GTLDTLKACAKAKSVRRVIYTSSINAASPLNNNGKFRDCVDESCWTPVDLIRREKPLFWSxxxxxTFLEQAALQYGSDHSIEVVTLAPALVAGPPLTPTLPASIEETLGLITGS
A9NVF9_______________GTLNVLRACTKAKTVKRVVVTSSA-ATTSINQSAEQNQYIDESCWTDVDFLRTVKPPTWSxxxxxTLAEQAALQYGKEQELDVVTIIPVLNVGPSITPSVPSSVQLALCLLTGN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain