SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene77952

Length: 261 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene77952
CGTCGTGACCTTGGCTGTCACTCATCTTCCACTGTTATAAATGTGGATGTTGCTATTCTATACAATTGAAGGATTGCCACCCTTGTGTGGCCTTGGCTGTCACCACAACTGCCCTGTGTGTTTCGAGTATTTATTCGACTCTACAAAGCTTATCAGCGTATTGCCTTGTGGTCACACTATTCACATGCATTGCTTGAAAGAGATGCACGAGCATCTTCAATTTGCTTGTCCAGTGTGCTCCAAATCTGTCTGTGATATGTC

Ace file of the UniGene sp_v1.1_unigene77952

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	zinc finger protein, putative	-	-	6.0e-28	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Blast2go	chy and ctchy and ring-type zinc finger protein	-	-	1.35927e-28	86%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	1.35927e-28	86%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	1.35927e-28	86%
Blast2go	Zinc finger, C3HC4 RING-type	IPR018957	-	1.35927e-28	86%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A9X0

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 62 aas, your sequence is shorter than subject: 86 - 273

Fln protein: VVTLAVTHLPLL*MWMLLFYTIEGLPPLCGLGCHHNCPVCFEYLFDSTKLISVLPCGHTIHMHCLKEMHEHLQFACPVCSKSVCDM

Protein Length: 87

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTTCCACTGTTATAAATGTGGATGTTGCTATTCTATACAATTGAAGGATTGCCACCCTTGTGTGGCCTTGGCTGTCACCACAACTGCCCTGTGTGTTTCGAGTATTTATTCGACTCTACAAAGCTTATCAGCGTATTGCCTTGTGGTCACACTATTCACATGCATTGCTTGAAAGAGATGCACGAGCATCTTCAATTTGCTTGTCCAGTGTGCTCCAAATCTGTCTGTGATATGTC

Fln Alignment:

sp_v1.1_unigene77952___HNCPVCFEYLFDSTKLISVLPCGHTIHMHCLKEMHEHLQFACPVCSKSVCDM
D5A9X0_______________HNCPVCFEYLFDSLKPIAVLRCGHTMHGDCLSEMQMHSQYSCPMCSKSVCDM

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain