SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene77943

Length: 556 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene77943
CGTCGTGACCTTGGCTGTCACTGGGGGGAAGCAGCTGAGAGCAGATTCTAAGCACAAGCCATGGCGCAGGCCGTAGCAGTGGGCAATACATACACTTCTTTCAGATTGCTCTCCAGTGGAGATTTAATCCCCAAGGATTTCTCTGCAAAGTCCCATTCAACTTCCTTCAGGCCGTCTTTGCCACATCGATCCCTTAGTCATTGCAGAAAACTTAGATCAGTTTGCAATGCTACGAACAGCTACTATTCGTCCTCCTCCTATGATGCAGGAACGTTTCCAGAGTGTTATTACCCAGCTTTTTCAACATAGAATAATTCGTTGTGGTGGAGCTGTGGATGATGACATGGCAAATCTCATTGTTGCTCAACTTCTGTATCTTGATGCAACGGATCCCAATAGGGATATTATAATGTACATCAATTCTCCTGGAGGATCAGTTACTGCTGGTATGGCTGTATTTGATACCATGAGGCATATCCGTCCAGATGTTTCTACAGTTTGTGTGGGACTTGCTGCAAGGTATATGGGCGCCTTTCTACTCAGTTCTGGTACAAAA

Ace file of the UniGene sp_v1.1_unigene77943

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP-dependent Clp protease proteolytic subunit n=1 Tax=Picea sitchensis RepID=A9NZU9_PICSI	-	-	95%
FL-Next	sp=ATP-dependent Clp protease proteolytic subunit; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	73%
Blast2go	protein	-	-	95%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplastic endopeptidase Clp complex	GO:0009840	Cellular Component	0.0	95%
Blast2go	chloroplast thylakoid	GO:0009534	Cellular Component	0.0	95%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Peptidase S14, ClpP	IPR001907	-	0.0	95%
Blast2go	Peptidase S14/S49	IPR023562	-	0.0	95%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZU9

Fln msg: Separated hits, possible frame ERROR between 237 and 251, Distance to subject end: 97 aas, your sequence is shorter than subject: 166 - 303

Fln protein: MAQAVAVGNTYTSFRLLSSGDLIPKDFSAKSHSTSFRPSLPHRSLSHCRKLRSVCNATxxxxxxPPPMMQERFQSVITQLFQHRIIRCGGAVDDDMANLIVAQLLYLDATDPNRDIIMYINSPGGSVTAGMAVFDTMRHIRPDVSTVCVGLAARYMGAFLLSSGTK

Protein Length: 167

Fln nts: CGTCGTGACCTTGGCTGTCACTGGGGGGAAGCAGCTGAGAGCAGATTCTAAGCACAAGCC_-_ATGGCGCAGGCCGTAGCAGTGGGCAATACATACACTTCTTTCAGATTGCTCTCCAGTGGAGATTTAATCCCCAAGGATTTCTCTGCAAAGTCCCATTCAACTTCCTTCAGGCCGTCTTTGCCACATCGATCCCTTAGTCATTGCAGAAAACTTAGATCAGTTTGCAATGCTACGAAxxxxxxxxxxxxxxxTCCTCCTCCTATGATGCAGGAACGTTTCCAGAGTGTTATTACCCAGCTTTTTCAACATAGAATAATTCGTTGTGGTGGAGCTGTGGATGATGACATGGCAAATCTCATTGTTGCTCAACTTCTGTATCTTGATGCAACGGATCCCAATAGGGATATTATAATGTACATCAATTCTCCTGGAGGATCAGTTACTGCTGGTATGGCTGTATTTGATACCATGAGGCATATCCGTCCAGATGTTTCTACAGTTTGTGTGGGACTTGCTGCAAGGTATATGGGCGCCTTTCTACTCAGTTCTGGTACAAAA

Fln Alignment:

sp_v1.1_unigene77943___GNTYTSFRLLSSGDLIPKDFSAKSHSTSFRPSLPHRSLSHCRKLRSVCNATNxxxxxPPPMMQERFQSVITQLFQHRIIRCGGAVDDDMANLIVAQLLYLDATDPNRDIIMYINSPGGSVTAGMAVFDTMRHIRPDVSTVCVGLAARYMGAFLLSSGTK
A9NZU9_______________GNTCSSFRLLSRGDLIPKSSSAKSHSTPFSLSLPRPPL---RKLRSVCNATNxxxxxPPPMLQERFQSVISQLFQHRIIRCGGAVDDDMANLIVAQLLYLDAADPNRDIIMYINSPGGSVTAGMAVFDTMRHIRPDVSTVCVGLAAS-MGAFLLSSGTK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain