SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene77817

Length: 540 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene77817
CGTCGTGACCTTGGCTGTCACTCAGGTTTTGAGTGCGCAGCAACAGTTTCCACCCATGGTTGAAGATGTGCCTAATATGCAAGGTCCTATTCCAGGATTTCAAGGCTATGGACCCATTCCTGCTAATATTGCGGGTCCTGGGGCCGAGTCAGCACAAGCCCCCGGGCAGAGTAGCTCCTGGTTTGGAGGATATAAAGGGCTTTTCGAGGGTAAGAAGGAAGATTCGCAGCATGGTAGTGGTAGTGGTAGTGGTAAGGCTGAAGTTTTGGAGAGTTTTGATCAGCCCAGTGCTCCAGTGCCCACTTTTGAGTTGAAGTGATTCGAGGGATTTTCGTATTCGTCTGCTTCAGCTACCAGCCTACCAGTGACCATGCCACATACAAGTGAGAAAAAGGTGATGACCATTAAACAAGACTGGCATCACACAAAGAATTTGTGGAAGTGTTTTGCACTCTTCCATCTATTCATTATCTCAGTCAAGCGCAGAAGATCTCAACCGGATAAAACTTATGCTTGTATTCCTCAAAATGACAACCTGAT

Ace file of the UniGene sp_v1.1_unigene77817

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	mitochondrial import inner membrane translocase subunit Tim17	-	-	1.0e-07	40%
FL-Next	sp=Mitochondrial import inner membrane translocase subunit Tim17; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	41%
Blast2go	predicted protein [Hordeum vulgare subsp. vulgare]	-	-	7.48237e-14	59%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9SP35

Fln msg: your sequence is shorter than subject: 106 - 243

Fln protein: VVTLAVTQVLSAQQQFPPMVEDVPNMQGPIPGFQGYGPIPANIAGPGAESAQAPGQSSSWFGGYKGLFEGKKEDSQHGSGSGSGKAEVLESFDQPSAPVPTFELK*

Protein Length: 107

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTTTTGAGTGCGCAGCAACAGTTTCCACCCATGGTTGAAGATGTGCCTAATATGCAAGGTCCTATTCCAGGATTTCAAGGCTATGGACCCATTCCTGCTAATATTGCGGGTCCTGGGGCCGAGTCAGCACAAGCCCCCGGGCAGAGTAGCTCCTGGTTTGGAGGATATAAAGGGCTTTTCGAGGGTAAGAAGGAAGATTCGCAGCATGGTAGTGGTAGTGGTAGTGGTAAGGCTGAAGTTTTGGAGAGTTTTGATCAGCCCAGTGCTCCAGTGCCCACTTTTGAGTTGAAGTGA___TTCGAGGGATTTTCGTATTCGTCTGCTTCAGCTACCAGCCTACCAGTGACCATGCCACATACAAGTGAGAAAAAGGTGATGACCATTAAACAAGACTGGCATCACACAAAGAATTTGTGGAAGTGTTTTGCACTCTTCCATCTATTCATTATCTCAGTCAAGCGCAGAAGATCTCAACCGGATAAAACTTATGCTTGTATTCCTCAAAATGACAACCTGAT

Fln Alignment:

sp_v1.1_unigene77817___PMVEDVPNMQGP-----IPGFQGYGPIPANIAGPGAESAQ-----------APGQSSSWFGGYKGLFEGKKEDSQHGSGSGSGKAEVLESFDQPSAPVPTFELK
Q9SP35_______________PGMQGMPGMQGMQGMPGMPGMQGMPGMQGMQMGQMQSQAQIRSESQNQNTASSSSSSSWFGG---LFDKKKEEVQPGSES---KTEVLESFDAP--PVPSFEFK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain