SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene77628

Length: 569 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene77628
CGTCGTGACCTTGGCTGTCACTCATTCGTCGTGCTTTGGCTGTGATCCGGTTTGAGAGTCTCACGGACAAGAGTAAGCGTCGATGACCTTGGCTGTCACTCATATTCACATTATTCCAGACAAGACAAACAATTCGTTGACTATTATCGACAGTGGTATTGGCATGACCAAATCTGATCTCGTGAACAACCTGGGAACCATTGCACGATCTGGCACGAAAGAATTTATGGAAGCTCTTGCTGCTGGTGCTGATGTTAGCATGATTGGTCAGTTTGGTGTGGGTTTCTACTCTGCGTATTTGGTTGCTGAGAAGGTGCTTGTCACCACCAAACACAATGACGATGAGCAATATATTTGGGAATCGCAGGCCGGCGGATCGTTTACTGTTACCAGAGACACAAGTGGGGAGGTTCTTGGTAGAGGAACCAAAATCACACTGTTGCTCAAAGATGATCAGCTGGAATACCTCGAGGAGAGGCGTTTGAAGGACCTTATTAAGAAGCATTCAGAGTTCATCAGCTATCCTATATCTCTCTGGACTGAGAAGACTACAGAGAAGGAAGTTTCAG

Ace file of the UniGene sp_v1.1_unigene77628

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Heat shock protein (Fragment) n=1 Tax=Picea mariana RepID=O65069_PICMA	-	-	97%
FL-Next	tr=GRP94; Pinus taeda (Loblolly pine).	-	-	59%
Blast2go	heat shock protein 90	-	-	97%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A7YAU9

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 538 aas, your sequence is shorter than subject: 189 - 834

Fln protein: VVTLAVTHSSCFGCDPV*ESHGQE*ASMTLAVTHIHIIPDKTNNSLTIIDSGIGMTKSDLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVLVTTKHNDDEQYIWESQAGGSFTVTRDTSGEVLGRGTKITLLLKDDQLEYLEERRLKDLIKKHSEFISYPISLWTEKTTEKEVS

Protein Length: 190

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCGTCGTGCTTTGGCTGTGATCCGGTTTGAGAGTCTCACGGACAAGAGTAAGCGTCGATGACCTTGGCTGTCACTCATATTCACATTATTCCAGACAAGACAAACAATTCGTTGACTATTATCGACAGTGGTATTGGCATGACCAAATCTGATCTCGTGAACAACCTGGGAACCATTGCACGATCTGGCACGAAAGAATTTATGGAAGCTCTTGCTGCTGGTGCTGATGTTAGCATGATTGGTCAGTTTGGTGTGGGTTTCTACTCTGCGTATTTGGTTGCTGAGAAGGTGCTTGTCACCACCAAACACAATGACGATGAGCAATATATTTGGGAATCGCAGGCCGGCGGATCGTTTACTGTTACCAGAGACACAAGTGGGGAGGTTCTTGGTAGAGGAACCAAAATCACACTGTTGCTCAAAGATGATCAGCTGGAATACCTCGAGGAGAGGCGTTTGAAGGACCTTATTAAGAAGCATTCAGAGTTCATCAGCTATCCTATATCTCTCTGGACTGAGAAGACTACAGAGAAGGAAGTTTCAG

Fln Alignment:

sp_v1.1_unigene77628___IHIIPDKTNNSLTIIDSGIGMTKSDLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVLVTTKHNDDEQYIWESQAGGSFTVTRDTSGEVLGRGTKITLLLKDDQLEYLEERRLKDLIKKHSEFISYPISLWTEKTTEKEV
A7YAU9_______________IKIKLDKENKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFLEQMQKGGDLNLIGQLGVGFYSVYLVADHVEVISKNNDDKQYIWESKADGAFAVSEDTENEPLGRGTEIRLHLKDEASEYLDETKLKDLVKKYSEFINFPIYLWASKEVDVEV

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
98	28	28		42	1.0
101	33	66			1.0
103		71	28		1.0
106		33	33	33	1.0
107	66			33	1.0
108		28		42	1.0
109	66	33			1.0
112		66	33		1.0
113	66		33		1.0
116	66		33		1.0
118		33		66	1.0
120		33		66	1.0
123	33	66			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain

Position	A %	C %	G %	T %	Probability
98	28	28		42	1.0
101	33	66			1.0
103		71	28		1.0
106		33	33	33	1.0
107	66			33	1.0
108		28		42	1.0
109	66	33			1.0
112		66	33		1.0
113	66		33		1.0
116	66		33		1.0
118		33		66	1.0
120		33		66	1.0
123	33	66			1.0

Position	A %	C %	G %	T %	Probability
98	28	28		42	1.0
101	33	66			1.0
103		71	28		1.0
106		33	33	33	1.0
107	66			33	1.0
108		28		42	1.0
109	66	33			1.0
112		66	33		1.0
113	66		33		1.0
116	66		33		1.0
118		33		66	1.0
120		33		66	1.0
123	33	66			1.0

Position	A %	C %	G %	T %	Probability
98	28	28		42	1.0
101	33	66			1.0
103		71	28		1.0
106		33	33	33	1.0
107	66			33	1.0
108		28		42	1.0
109	66	33			1.0
112		66	33		1.0
113	66		33		1.0
116	66		33		1.0
118		33		66	1.0
120		33		66	1.0
123	33	66			1.0