SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene77578

Length: 576 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene77578
CGTCGTGACCTTGGCTGTCACTCAATATCATTTGGCGATCCACAGCCGTCGATCACCTTGACTGATCTAACGGACCAGAGTCCCCGTGAAAAGTTGTTATTCCTTTCCTAGCGCAACGCATCCAGGCAATTTCAGGGTGCACTGTCGTTTCTCAGTTGATCGAGTTTAAAAGCTGCGAGGGATTTCATCATACGCCATAGTTTCCTCTCTGGTGTGTCTTGCCTCGCTTCTGTTTTTATTTATTTCTTCGTTTGAGGTATTTTTGCGAAGCTAATAGATTTGCGTTTGCCCGTTTCGATCCGACTATCCAGTGCAAATGGCGGAGCAGTTGACCGAGGATCAGATCGCAGAGTTCAAGGAGGCTTTCAGTCTGTTTGACAAAGATGGCGATGGCTGCATTACTACCAAAGAATTGGGTACTGTTATGCGCTCTCTAGGACAGAATCCAACTGAAGCTGAACTTCAGGACATGATCAGTGAAGTTGATGCTGATGGTAATGGGACAATTGATTTTCCAGAGTTCCTGAACCTTATGGCTCGAAAGATGAAGGATACTGACTCAGAGGAAGAGTTGAA

Ace file of the UniGene sp_v1.1_unigene77578

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UGT4 n=1 Tax=Pueraria montana var. lobata RepID=C6ZJB5_PUELO	-	-	8.00001e-41	96%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Blast2go	calmodulin	-	-	1.34511e-41	100%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Calcium-binding EF-hand	IPR002048	-	1.34511e-41	100%
Blast2go	EF-hand-like domain	IPR011992	-	1.34511e-41	100%
Blast2go	EF-Hand 1, calcium-binding site	IPR018247	-	1.34511e-41	100%
Blast2go	EF-hand	IPR018248	-	1.34511e-41	100%
Blast2go	EF-HAND 2	IPR018249	-	1.34511e-41	100%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRI1

Fln msg: Distance to subject end: 62 aas, your sequence is shorter than subject: 86 - 149

Fln protein: MAEQLTEDQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMISEVDADGNGTIDFPEFLNLMARKMKDTDSEEEL

Protein Length: 87

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATATCATTTGGCGATCCACAGCCGTCGATCACCTTGACTGATCTAACGGACCAGAGTCCCCGTGAAAAGTTGTTATTCCTTTCCTAGCGCAACGCATCCAGGCAATTTCAGGGTGCACTGTCGTTTCTCAGTTGATCGAGTTTAAAAGCTGCGAGGGATTTCATCATACGCCATAGTTTCCTCTCTGGTGTGTCTTGCCTCGCTTCTGTTTTTATTTATTTCTTCGTTTGAGGTATTTTTGCGAAGCTAATAGATTTGCGTTTGCCCGTTTCGATCCGACTATCCAGTGCAA_-_ATGGCGGAGCAGTTGACCGAGGATCAGATCGCAGAGTTCAAGGAGGCTTTCAGTCTGTTTGACAAAGATGGCGATGGCTGCATTACTACCAAAGAATTGGGTACTGTTATGCGCTCTCTAGGACAGAATCCAACTGAAGCTGAACTTCAGGACATGATCAGTGAAGTTGATGCTGATGGTAATGGGACAATTGATTTTCCAGAGTTCCTGAACCTTATGGCTCGAAAGATGAAGGATACTGACTCAGAGGAAGAGTTGAA

Fln Alignment:

sp_v1.1_unigene77578___MAEQLTEDQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMISEVDADGNGTIDFPEFLNLMARKMKDTDSEEEL
A9NRI1_______________MAEQLTEDQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMISEVDADGNGTIDFPEFLNLMARKMKDTDSEEEL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
308		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain