SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene77543

Length: 715 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene77543

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chaperone protein dnaJ 11, chloroplast precursor, putative	-	-	4.0e-17	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	dnaj heat shock n-terminal domain-containing protein	-	-	0.0	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to stress	GO:0006950	Biological Process	0.0	59%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	59%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Heat shock protein DnaJ, N-terminal	IPR001623	-	0.0	59%
Blast2go	Heat shock protein DnaJ	IPR003095	-	0.0	59%

Full-Lengther Next Prediction

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
152		33		66	0.997452
155	66	33			0.997452
156			33	66	0.997452
158			33	66	0.997452
159	33			66	0.997452
163		66		33	0.997452
165		66	33		0.997452
166	66	33			0.997452
171		33		66	0.997453
172	33			66	0.997453
187		66	33		0.997452
288		40	60		1.0
289		60	40		1.0
290	60			40	1.0
292	40		60		1.0
296		50		50	1.0
297			50	50	1.0
300		50		50	1.0
303		50	50		1.0
306			50	50	1.0
497	80		20		0.995493
537	83		16		0.994512
540	83		16		0.994512
550		83	16		0.994512
560		20		80	0.995505
586	40	60			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain