SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene77516

Length: 542 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene77516
CGTCGTGACCTTGGCTGTCACTCGTGACTTGTTTGTCACTCCACTTTACATTTTCAGCCAGCAAAAATATATAAATCGTTACAGAATAGCCCAGCAATATTCGAGGAGGGCATGCATGAAGAAGGCATTGCTCTGCTCGAACACATAGTAGTCTGATCTCTGCGCTTCGAGCACTACGAGAATTGCTTCACCATTACCTTCATCATCCACCAATGGCGGCCGAAGATTTTAATGACAAGAATGCTGTATTCAGAAAGCTCCGGGCCAAGCCCGACAACAAGATGTGTTTTGACTGTAATACAAGGAATCCCACATGGGCATCGGTCACTTACGGGGTTTTCATCTGCCTGGATTGTTCTGCATCTCATCGTAGTCTTGGCGTTCACATTAGCTTTGTCAGAAAGTGATTTGTCTTCCCACAATGAAGACAATGGTGGAGATCAAAACACCGACTATATCTGTAAACCTGGACTCATGGACTCCTGAACAGTTGAAGGTCATGAGCTTTGGTGGCAATGGCCGAGGACATACATTCTTCAAGC

Ace file of the UniGene sp_v1.1_unigene77516

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	arf gtpase-activating protein, putative; K12493 ADP-ribosylation factor GTPase-activating protein 2/3	-	-	1.0e-34	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	arf gtpase-activating	-	-	6.18673e-42	91%

Source	GOs	Term	Type	e value	Identity
Blast2go	pollen development	GO:0009555	Biological Process	6.18673e-42	91%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	6.18673e-42	91%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9S4

Fln msg: Separated hits, possible frame ERROR between 401 and 458, Distance to subject end: 315 aas, your sequence is shorter than subject: 110 - 406

Fln protein: MAAEDFNDKNAVFRKLRAKPDNKMCFDCNTRNPTWASVTYGVFICLDCSASHRSLGVHISFVxxxxxxxxxxxxxxxxxxxxSVNLDSWTPEQLKVMSFGGNGRGHTFFK

Protein Length: 111

Fln nts: CGTCGTGACCTTGGCTGTCACTCGTGACTTGTTTGTCACTCCACTTTACATTTTCAGCCAGCAAAAATATATAAATCGTTACAGAATAGCCCAGCAATATTCGAGGAGGGCATGCATGAAGAAGGCATTGCTCTGCTCGAACACATAGTAGTCTGATCTCTGCGCTTCGAGCACTACGAGAATTGCTTCACCATTACCTTCATCATCCACCA_-_ATGGCGGCCGAAGATTTTAATGACAAGAATGCTGTATTCAGAAAGCTCCGGGCCAAGCCCGACAACAAGATGTGTTTTGACTGTAATACAAGGAATCCCACATGGGCATCGGTCACTTACGGGGTTTTCATCTGCCTGGATTGTTCTGCATCTCATCGTAGTCTTGGCGTTCACATTAGCTTTGTCAGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxATCTGTAAACCTGGACTCATGGACTCCTGAACAGTTGAAGGTCATGAGCTTTGGTGGCAATGGCCGAGGACATACATTCTTCAAGC

Fln Alignment:

sp_v1.1_unigene77516___MAAEDFNDKNAVFRKLRAKPDNKMCFDCNTRNPTWASVTYGVFICLDCSASHRSLGVHISFVRxxxxxxxxxxxxxxxxxxxSVNLDSWTPEQLKVMSFGGNGRGHTFFK
D5A9S4_______________MAAEDFSDKNAVFRKLRAKPENKMCFDCSTRNPTWASVTYGIFICLDCSASHRSLGVHISFVRxxxxxxxxxxxxxxxxxxxSVNLDSWTPEQLKVMSFGGNGRGHTFFK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain