SustainPineDB

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Assembly info
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SNPs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene77493

Length: 354 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene77493
CGTCGTGACCTTGGCTGTCACTCATTCTCTAATGAATGGTCTGATGGGCTTCTTGGTATTGGAAACCAAAAGGTGGAGCTCTTGAAGGAGGGGTGCGCTCTCGAGAAATTGTGCAAGTGCCAAGAAGATATTCATTGCGCTCCAAAGGCCGGCTACCTCTGTAAACCTGGCAGAGTATGGACCAACGCTCGTGTTTGCAGAAAGAGCAATTAATTCGACACTTCCCTTACTATTCATATCTTAGACGAGAGGCCACGAAGACCTTACTGCCCCTGTTATGGCCGTTTTTACATGACAATAGTACAATAATATTATTATAAATACATGTTTCAAAATACAATCATAATCCACCCA

Ace file of the UniGene sp_v1.1_unigene77493

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	fad-binding domain-containing protein	-	-	1.79282e-26	78%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LR72

Fln msg: your sequence is shorter than subject: 71 - 601

Fln protein: RRDLGCHSFSNEWSDGLLGIGNQKVELLKEGCALEKLCKCQEDIHCAPKAGYLCKPGRVWTNARVCRKSN*

Protein Length: 72

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCTCTAATGAATGGTCTGATGGGCTTCTTGGTATTGGAAACCAAAAGGTGGAGCTCTTGAAGGAGGGGTGCGCTCTCGAGAAATTGTGCAAGTGCCAAGAAGATATTCATTGCGCTCCAAAGGCCGGCTACCTCTGTAAACCTGGCAGAGTATGGACCAACGCTCGTGTTTGCAGAAAGAGCAATTAA___TTCGACACTTCCCTTACTATTCATATCTTAGACGAGAGGCCACGAAGACCTTACTGCCCCTGTTATGGCCGTTTTTACATGACAATAGTACAATAATATTATTATAAATACATGTTTCAAAATACAATCATAATCCACCCA

Fln Alignment:

sp_v1.1_unigene77493___FSNEWSDGLLGIGNQKVELLKEGCALEKLCKCQEDIHCAPKAGYLCKPGRVWTNARVCRKSN
B8LR72_______________FSNEWTDGLLGIGGHKVEVLKNGCALEKLCKCREDIHCAPQAGYLCRPGRVWKNARVCRKGN

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
60	66	33			0.997459
61			33	66	0.997459
63		33	66		0.997461
65	66			33	0.997464
66	66		33		0.997464
71	66			33	0.997457
72	66			33	0.997454
73	66		33		0.997454
75		33	66		0.997476
162		75	25		0.996478
168	75		25		0.996478
170	75	25			0.996477
172		66		33	0.997452
177	66			33	0.997452
179	66			33	0.997452
180		33	66		0.997452
181	33			66	0.997452
182	66	33			0.997452
184		33	66		0.997452
185	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain