SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene77464

Length: 564 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene77464
CCGCCAAGCCGGCGTGTCTGAACGCCTTCCACATAATCTCCCTCTCGCCCGGCTTCAATCTGTCGGGACTGTTCAAGGACAAGGTCGTAAAGCAGGAGCCGTCAAGATTCATGTCGACTCAGTCGGCGGCGAGCATAATGTCGAAGCTGGAGGAGATAGCCAGAGTGCTGAAATTCAGCATCAAGAAGTCCAAAAACTGCAAGGTGGAGTTGCAGGACTCGAAGAAGGGGCGGAAGGGGCATTTGTGTATTGATGCCGAGATTTTCGAAGTGGCGCCCTCGCTCTTCATGGTGGAGTTTGGGAAAACCAGGGGGGATACGCTCGAGTACAGTAATTTCTGCAGCGAGAGCCTGAGGCCAGGTCTCAAGGATATTGTGTGGACATGGGACAGCGATAGTCAACCTAGTGAATCGTAGATATTCGCTGTATATATATACAGTGTCATGTGATTATTCAGCATATACTGTTTCCTTTTAATTTATACGAAAGACAAAGGCCAGCCCTGGACTTCTGTATAAAGGATTCAATAAAATTTGAATGGAAGGAGTGTCGTGTGAATGTGTA

Ace file of the UniGene sp_v1.1_unigene77464 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CBL-interacting protein kinase 16 n=2 Tax=Vitis vinifera RepID=C4P7W5_VITVI	-	-	1.0e-38	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	cbl-interacting protein kinase	-	-	0.0	73%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWN4

Fln msg: your sequence is shorter than subject: 138 - 433

Fln protein: AKPACLNAFHIISLSPGFNLSGLFKDKVVKQEPSRFMSTQSAASIMSKLEEIARVLKFSIKKSKNCKVELQDSKKGRKGHLCIDAEIFEVAPSLFMVEFGKTRGDTLEYSNFCSESLRPGLKDIVWTWDSDSQPSES*

Protein Length: 139

Fln nts: CCGCCAAGCCGGCGTGTCTGAACGCCTTCCACATAATCTCCCTCTCGCCCGGCTTCAATCTGTCGGGACTGTTCAAGGACAAGGTCGTAAAGCAGGAGCCGTCAAGATTCATGTCGACTCAGTCGGCGGCGAGCATAATGTCGAAGCTGGAGGAGATAGCCAGAGTGCTGAAATTCAGCATCAAGAAGTCCAAAAACTGCAAGGTGGAGTTGCAGGACTCGAAGAAGGGGCGGAAGGGGCATTTGTGTATTGATGCCGAGATTTTCGAAGTGGCGCCCTCGCTCTTCATGGTGGAGTTTGGGAAAACCAGGGGGGATACGCTCGAGTACAGTAATTTCTGCAGCGAGAGCCTGAGGCCAGGTCTCAAGGATATTGTGTGGACATGGGACAGCGATAGTCAACCTAGTGAATCGTAG___ATATTCGCTGTATATATATACAGTGTCATGTGATTATTCAGCATATACTGTTTCCTTTTAATTTATACGAAAGACAAAGGCCAGCCCTGGACTTCTGTATAAAGGATTCAATAAAATTTGAATGGAAGGAGTGTCGTGTGAATGTGTA

Fln Alignment:

sp_v1.1_unigene77464___AKPACLNAFHIISLSPGFNLSGLFKDKVVKQEPSRFMSTQSAASIMSKLEEIARVLKFSIKKSKNCKVELQDSKKGRKGHLCIDAEIFEVAPSLFMVEFGKTRGDTLEYSNFCSESLRPGLKDIVWTWDSDSQPSES
A9NWN4_______________AKPACLNAFDIISLSPGFSLSGLFKDKVVKQESSRFMSIQPASSIMSKLEEIARVLRFSVKKSKNCKVELQDSKKGRKGHLCIDAEIFEVTPSLFLVELGKTGGDTLEYSKFCSQALKPGLKDIVWAWDGDNQLSES

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
328	16	83			0.994513
329		83	16		0.994513
330		83		16	0.994513
331			16	83	0.994512
332	16			83	0.994512
334	16	83			0.994513
339	16	83			0.994513
340		83	16		0.994512
341			16	83	0.994512
345	16			83	0.994512
366		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain