SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene77384

Length: 894 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene77384 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	hydroxypyruvate reductase	-	-	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	hydroxypyruvate reductase	-	-	94%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	94%
Blast2go	poly(U) RNA binding	GO:0008266	Molecular Function	94%
Blast2go	peroxisome	GO:0005777	Cellular Component	94%
Blast2go	chloroplast	GO:0009507	Cellular Component	94%
Blast2go	apoplast	GO:0048046	Cellular Component	94%

Source	InterPros	Term	Type	e value	Identity
Blast2go	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding	IPR006140	-	0.0	94%
Blast2go	NAD(P)-binding domain	IPR016040	-	0.0	94%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NKT9

Fln msg: Separated hits, possible frame ERROR between 595 and 598, Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 242 - 386

Fln protein: NSSSC*KSS*SVVNEAGLNDGWLPHLFVGNLLKGQTVGIIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKYLTAYGEFLMSQGEAPVTWKRASTAEDVLREADVISLHPVLDKTTYHLINKDRLSIMKKEAVLVNASRGPVIDEAALVDHLKANPMFRVGLDVFENEPYMKPGLAEQKNAVVVPHIASASKWTxxKGWPHLLHSNVLEPFLDENSTPPAACPSIVNAKVLGLDISKL*

Protein Length: 243

Fln nts: TAACAGTAGCAGCTGCTAGAAGAGTAGTTGAAGCGTCGTGAACGAGGCAGGCCTAAATGATGGTTGGCTACCTCACTTATTTGTTGGAAACTTGCTCAAGGGACAAACCGTTGGCATAATTGGCGCTGGAAGGATTGGCTCTGCGTATGCCCGAATGATGGTGGAAGGTTTTAAAATGAATCTCATATACTATGATTTATACCAATCTACTCGACTTGAAAAATATCTGACAGCTTATGGGGAGTTTTTGATGTCTCAAGGTGAAGCGCCAGTTACATGGAAAAGGGCCTCCACTGCTGAGGATGTTCTCAGAGAGGCTGACGTGATAAGCCTTCATCCCGTACTAGACAAGACTACTTACCACTTGATTAACAAAGACAGGCTATCGATCATGAAGAAGGAAGCAGTTCTTGTAAATGCAAGCCGAGGCCCAGTGATTGATGAAGCAGCCTTAGTGGACCATTTGAAAGCAAATCCCATGTTTCGTGTAGGATTGGATGTGTTTGAGAATGAGCCATACATGAAGCCTGGTCTTGCAGAGCAGAAGAATGCTGTTGTGGTGCCACACATTGCCTCAGCTTCAAAGTGGACTCGxxxCAAGGGATGGCCACACTTGCTGCATTCAAATGTACTGGAACCCTTTCTAGATGAGAACTCTACACCTCCAGCTGCCTGTCCAAGCATTGTCAATGCAAAAGTACTAGGTTTAGATATTTCCAAGCTTTAAGATGGATCCTACGTCTTGGTAAAGATGGTGCGTTTGAACTTGAAGTGCAAGATGACCTGTGTAAAGAAGCTTAACATGGAGTCCGATTGAAAAGGCTCCCAGATGTATCTTTCTGGTGTTTCTTACTGATTTTCCATGAAAAATGTGAGCCATATTTTTACTTCAAAA

Fln Alignment:

sp_v1.1_unigene77384___AGLNDGWLPHLFVGNLLKGQTVGIIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKYLTAYGEFLMSQGEAPVTWKRASTAEDVLREADVISLHPVLDKTTYHLINKDRLSIMKKEAVLVNASRGPVIDEAALVDHLKANPMFRVGLDVFENEPYMKPGLAEQKNAVVVPHIASASKWTRxKGWPHLLHSNVLEPFLDENSTPPAACPSIVNAKVLGLDISKL
A9NKT9_______________AGLYDGWLPHLFVGNLLKGQTVGIIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKYMTAYGEFLKSQGEAPVTWKRASTAEDVLRDADVISLHPILDKTTYHLINKDRLSIMKKEAVLVNASRGPVIDEAALVNHLKANPMFRVGLDVFEDEPYMKPGLAEQKNAVVVPHIASASKWTRxKGYPVWPDANKLEPFLDENSAPPAACPSIVNAKLLGLEVSKL

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
301		50		50	1.0
304	66			33	1.0
305			66	33	1.0
316	83		16		0.994512
454	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain