SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene77298

Length: 431 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene77298
ATTTGCAGTTGTCGATTGCCACTCCTGGCCCCAACATTTTCCGGAAAAGAAAAAAACAAGTTGGTCTAGCTCCAGCTACAATAGTTCGGGTGCAGAGAGAAGTGGATAACACGCTCAAACCCCTGAATATGAATCGACCTTTAGTGGCGGGTGGTTATGGGACAATGTAAGAGCTTCTAGAGATGATCACATCGTCACAACTAGGCATTCATGATAAGCCGGGCGTTGAAGAGGGATTTATAAAGCCTTCTGCGTGGCATATTGTTGTGTCTGCTCCAACAGGAAAACAACTTATAGCCAGGATGGAGGAATATGTACCTATACACTACAGGGTTGCTCCTCGAAGAAACTGAGAAATTGAATGACTAGGATACCCTGCAGCCTCTGATTTGCAGTCATAATAAATTTGACCTGGCTTGGTCCCCAATTGT

Ace file of the UniGene sp_v1.1_unigene77298

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative lysine decarboxylase-like protein (Fragment) n=1 Tax=Cupressus sempervirens RepID=B1PIE2_9CONI	-	-	2.0e-18	60%
FL-Next	sp=Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	54%
Blast2go	protein	-	-	3.05862e-18	62%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: Q84MC2

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 16 aas, your sequence is shorter than subject: 117 - 216

Fln protein: LQLSIATPGPNIFRKRKKQVGLAPATIVRVQREVDNTLKPLNMNRPLVAGGYGTM*ELLEMITSSQLGIHDKPGVEEGFIKPSAWHIVVSAPTGKQLIARMEEYVPIHYRVAPRRN*

Protein Length: 118

Fln nts: ATTTGCAGTTGTCGATTGCCACTCCTGGCCCCAACATTTTCCGGAAAAGAAAAAAACAAGTTGGTCTAGCTCCAGCTACAATAGTTCGGGTGCAGAGAGAAGTGGATAACACGCTCAAACCCCTGAATATGAATCGACCTTTAGTGGCGGGTGGTTATGGGACAATGTAAGAGCTTCTAGAGATGATCACATCGTCACAACTAGGCATTCATGATAAGCCGGGCGTTGAAGAGGGATTTATAAAGCCTTCTGCGTGGCATATTGTTGTGTCTGCTCCAACAGGAAAACAACTTATAGCCAGGATGGAGGAATATGTACCTATACACTACAGGGTTGCTCCTCGAAGAAACTGA___GAAATTGAATGACTAGGATACCCTGCAGCCTCTGATTTGCAGTCATAATAAATTTGACCTGGCTTGGTCCCCAATTGT

Fln Alignment:

sp_v1.1_unigene77298___GGYGTM*ELLEMITSSQLGIHDKP-------------------GVEEGFIKPSAWHIVVSAPTGKQLIARMEEYVPIHYRVAPRRN*EIE*LG-YP
Q84MC2_______________GGYGTMEELLEMITWSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGARNIVVSAPTAKELMEKMEEYTPSHMHVASHESWKVEELGDYP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain