SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene77290

Length: 305 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene77290
CGTCGTGACCTTGGCTGTCACTCAAAAAGGTAATACAAGACAGATAGATTGAATAGTCCGCGTGACCTTGGTTGGAGATTGGGGAGAGGAAAGTTGGGGTGGCGATGGACATGTCTCCATGCAGCAGAGGTGCCCTGAAATGGGCCGTCGAGAGCCTTCTTCGAGAGGGAGACCATCTCGTTGTTATCAGTGTTCAAGGAAAAGTAACATACGAGGAAGGGCACTCCCAGCTCTGGGAGGACACTGGATCGCCTCTCATTCCTTTGATTGAGTACGAAGAACCCAGCATTGTCAAGAAATATGGA

Ace file of the UniGene sp_v1.1_unigene77290

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Universal stress protein n=1 Tax=Jatropha curcas RepID=D6BRD7_9ROSI	-	-	8.0e-21	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	universal stress protein family protein	-	-	2.03428e-30	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to cold	GO:0009409	Biological Process	2.03428e-30	75%
Blast2go	plasma membrane	GO:0005886	Cellular Component	2.03428e-30	75%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWU4

Fln msg: Distance to subject end: 87 aas, your sequence is shorter than subject: 67 - 163

Fln protein: MDMSPCSRGALKWAVESLLREGDHLVVISVQGKVTYEEGHSQLWEDTGSPLIPLIEYEEPSIVKKYG

Protein Length: 68

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAAAGGTAATACAAGACAGATAGATTGAATAGTCCGCGTGACCTTGGTTGGAGATTGGGGAGAGGAAAGTTGGGGTGGCG_-_ATGGACATGTCTCCATGCAGCAGAGGTGCCCTGAAATGGGCCGTCGAGAGCCTTCTTCGAGAGGGAGACCATCTCGTTGTTATCAGTGTTCAAGGAAAAGTAACATACGAGGAAGGGCACTCCCAGCTCTGGGAGGACACTGGATCGCCTCTCATTCCTTTGATTGAGTACGAAGAACCCAGCATTGTCAAGAAATATGGA

Fln Alignment:

sp_v1.1_unigene77290___ERKVGVAMDMSPCSRGALKWAVESLLREGDHLVVISVQGKVTYEEGHSQLWEDTGSPLIPLIEYEEPSIVKKYG
A9NWU4_______________ERKVGVAMDMSECSRGALKWAVESLLREGDCLVIINVQGSVTYEEGHSQLWEDTGSPFIPLIEYEDPSTTKRYG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain