SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene77288

Length: 296 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene77288
CGTCGTGACCTTGGCTGTCACTCAAGGTAAGCTAGTAGCGGTGGTAGTACTCGACGGATGGGGCGAGAATATATCAGACCAATACAATGCAATTCACCTCGCAAAGACTCCCACCATGGATTTCCTCAAGAAGGGAAAACCAGATAGATGGAGGCTAATAAAAGCTCATGGTCCTGCAGTAGGACTTCCGACAGAGGATGATATGGGTAACAGTGAAGTGGGCCACAATGCTCTTGGAGCTGGAAGGATATATGCACAAGGGGCTAAATTAGTGGATTTGGCACTTGCATCAGGCA

Ace file of the UniGene sp_v1.1_unigene77288

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	2,3-bisphosphoglycerate-independent phosphoglycerate mutase n=4 Tax=Malpighiales RepID=PMGI_RICCO	-	-	5.0e-37	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Blast2go	bisphosphoglycerate-independent phosphoglycerate mutase	-	-	8.62072e-37	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	8.62072e-37	88%
Blast2go	catalytic activity	GO:0003824	Molecular Function	8.62072e-37	88%
Blast2go	cytosol	GO:0005829	Cellular Component	8.62072e-37	88%
Blast2go	apoplast	GO:0048046	Cellular Component	8.62072e-37	88%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Metalloenzyme	IPR006124	-	8.62072e-37	88%
Blast2go	Alkaline phosphatase-like, alpha/beta/alpha	IPR017849	-	8.62072e-37	88%
Blast2go	Alkaline-phosphatase-like, core domain	IPR017850	-	8.62072e-37	88%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMV6

Fln msg: Distance to subject end: 269 aas, atg_distance in limit (1-15): atg_distance = 11, W2: There is no M at the beginning, your sequence is shorter than subject: 98 - 377

Fln protein: VVTLAVTQGKLVAVVVLDGWGENISDQYNAIHLAKTPTMDFLKKGKPDRWRLIKAHGPAVGLPTEDDMGNSEVGHNALGAGRIYAQGAKLVDLALASG

Protein Length: 99

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGGTAAGCTAGTAGCGGTGGTAGTACTCGACGGATGGGGCGAGAATATATCAGACCAATACAATGCAATTCACCTCGCAAAGACTCCCACCATGGATTTCCTCAAGAAGGGAAAACCAGATAGATGGAGGCTAATAAAAGCTCATGGTCCTGCAGTAGGACTTCCGACAGAGGATGATATGGGTAACAGTGAAGTGGGCCACAATGCTCTTGGAGCTGGAAGGATATATGCACAAGGGGCTAAATTAGTGGATTTGGCACTTGCATCAGGCA

Fln Alignment:

sp_v1.1_unigene77288___VTQGKLVAVVVLDGWGENISDQYNAIHLAKTPTMDFLKKGKPDRWRLIKAHGPAVGLPTEDDMGNSEVGHNALGAGRIYAQGAKLVDLALASG
B8LMV6_______________IPKGKQLAVIILDGWGEEKPDQYNCIYVAETPTMDSLKKGAPEKWTLIKAHGPAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDYALASG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain