SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene77240

Length: 478 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene77240
ATGGGGGAAGAAAAGAGTAGCGTGCTTCGGCTTCTCTGACTAACAGAAAAAATCTCGGTTCTGTGAGTCTGTAGTCTCAGCTAAAAATGCCGATAGGAGTTGCGTTTGGCAGATTTGACGAGGCTTTTGGCCTGGATGGTTTCAAGTCTTATCTGGCGGAGTTTATTTCTACTCTGCTGTTTGTGTTTGCTGGTGTTGGCTCTGCCATGGCCTACGGTCTGTGCTGTGCTGACCTGGTCAAGTGCTTAGACTCTGCTATGTGGTTTTAATGTTGGTTTCTTGGTTTTTGCAGCTGATAAGGTTTGGTTTTGCAGATAAGTTGACATCCAGCGCAGCTTTAGATCCAGCGGGGCTCGTCGGCGTTGCGGTCTGCCATGGTTTTGCTCTGTTCGTGGCCGTGTCCATTGCGGCGAACATCTCCGGTGGCCACGTTAACCCGGCCGTCACTTTTGGGCTGGTCCTTGGTGGCCAGATCACC

Ace file of the UniGene sp_v1.1_unigene77240

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Aquaporin TIP2;3 n=3 Tax=Gossypium hirsutum RepID=D9DBW6_GOSHI	-	-	2.0e-32	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Blast2go	delta tonoplast intrinsic protein	-	-	6.57874e-35	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	urea transport	GO:0015840	Biological Process	6.57874e-35	89%
Blast2go	water transport	GO:0006833	Biological Process	6.57874e-35	89%
Blast2go	ammonia transmembrane transporter activity	GO:0051739	Molecular Function	6.57874e-35	89%
Blast2go	methylammonium transmembrane transporter activity	GO:0015200	Molecular Function	6.57874e-35	89%
Blast2go	urea transmembrane transporter activity	GO:0015204	Molecular Function	6.57874e-35	89%
Blast2go	water channel activity	GO:0015250	Molecular Function	6.57874e-35	89%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	6.57874e-35	89%
Blast2go	plant-type vacuole membrane	GO:0009705	Cellular Component	6.57874e-35	89%
Blast2go	central vacuole	GO:0042807	Cellular Component	6.57874e-35	89%
Blast2go	plasma membrane	GO:0005886	Cellular Component	6.57874e-35	89%
Blast2go	protein storage vacuole	GO:0000326	Cellular Component	6.57874e-35	89%
Blast2go	chloroplast	GO:0009507	Cellular Component	6.57874e-35	89%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PT26

Fln msg: Separated hits, possible frame ERROR between 215 and 284, Distance to subject end: 33 aas,

Fln protein: MPIGVAFGRFDEAFGLDGFKSYLAEFISTLLFVFAGVGSAMAxxxxxxxxxxxxxxxxxxxxxxxxFLQLIRFGFADKLTSSAALDPAGLVGVAVCHGFALFVAVSIAANISGGHVNPAVTFGLVLGGQIT

Protein Length: 132

Fln nts: ATGGGGGAAGAAAAGAGTAGCGTGCTTCGGCTTCTCTGACTAACAGAAAAAATCTCGGTTCTGTGAGTCTGTAGTCTCAGCTAAAA_-_ATGCCGATAGGAGTTGCGTTTGGCAGATTTGACGAGGCTTTTGGCCTGGATGGTTTCAAGTCTTATCTGGCGGAGTTTATTTCTACTCTGCTGTTTGTGTTTGCTGGTGTTGGCTCTGCCATGGCCTAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTTTTTGCAGCTGATAAGGTTTGGTTTTGCAGATAAGTTGACATCCAGCGCAGCTTTAGATCCAGCGGGGCTCGTCGGCGTTGCGGTCTGCCATGGTTTTGCTCTGTTCGTGGCCGTGTCCATTGCGGCGAACATCTCCGGTGGCCACGTTAACCCGGCCGTCACTTTTGGGCTGGTCCTTGGTGGCCAGATCACC

Fln Alignment:

sp_v1.1_unigene77240___MPIGVAFGRFDEAFGLDGFKSYLAEFISTLLFVFAGVGSAMAYxxxxxxxxxxxxxxxxxxxxxxxFLQLIRFGFA--------DKLTSSAALDPAGLVGVAVCHGFALFVAVSIAANISGGHVNPAVTFGLVLGGQIT
C0PT26_______________MAIGVAFGRFDEAFGLDGFKSYLAEFISTLLFVFAGVGSAMAYxxxxxxxxxxxxxxxxxxxxxxxFISTLLFVFAGVGSAMAYDKLTSSAALDPAGLVGVAICHGFALFVAVAIAANISGGHVNPAVTFGLVLGGQIT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain