SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene76933

Length: 401 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene76933
CGTCGTGACCTTGGCTGTCACTCATGTTTGGTATCGCTTCCTGTTCAGAATTCGGCATCCTCAACATGGCACCTCCTTCAGGATGGCATCTTCAAAAATGCGTTTGACCTTGGCTTTCACTTCAATATACCGGACCTCCGCGTGGGAACGCTGGATTCTCTACTGGCTCTCAGTGACGATCTGAGCAAGGCAAATTCCTTTGTGGAAGCAGTGACCCACAAGATTCGTCGGCAGATTGAGGAATTAGAGAAGGCTTCTGGTGTTGAATCGGGGGTGCTGACCATTAATGGCGTTCCTGTGGATTCTTACATTACCAGGTTTACTTGGGATGAAGCCAAGTACCCAGTCATGTCACCTCTCCGAGAACTTGTGGATGCCATACATGATGGTGTGGCGAAGTC

Ace file of the UniGene sp_v1.1_unigene76933

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	vacuolar ATP synthase subunit C, putative (EC:3.6.3.14); K02148 V-type H+-transporting ATPase subunit C [EC:3.6.3.14]	-	-	6.0e-38	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	vacuolar atp synthase subunit c	-	-	0.0	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	H(+)-transporting two-sector ATPase.	EC:3.6.3.14	-	0.0	81%

Source	KEGGs	Term	Identity
Blast2go	Oxidative phosphorylation	00190	81%
Blast2go	Photosynthesis	00195	81%
Blast2go	Methane metabolism	00680	81%
Blast2go	Metabolic pathways	01100	81%

Source	ECs	Term	Type	e value	Identity
AutoFact	H(+)-transporting two-sector ATPase.	EC:3.6.3.14	-	6.0e-38	64%

Source	KEGGs	Term	e value	Identity
AutoFact	Oxidative phosphorylation	00190	6.0e-38	64%
AutoFact	Photosynthesis	00195	6.0e-38	64%
AutoFact	Methane metabolism	00680	6.0e-38	64%
AutoFact	Metabolic pathways	01100	6.0e-38	64%

Source	GOs	Term	Type	Identity
Blast2go	lignin biosynthetic process	GO:0009809	Biological Process	81%
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	81%
Blast2go	proton-transporting ATPase activity, rotational mechanism	GO:0046961	Molecular Function	81%
Blast2go	vacuolar proton-transporting V-type ATPase, V1 domain	GO:0000221	Cellular Component	81%
Blast2go	plant-type vacuole	GO:0000325	Cellular Component	81%
Blast2go	chloroplast	GO:0009507	Cellular Component	81%
Blast2go	plasma membrane	GO:0005886	Cellular Component	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	ATPase, V1 complex, subunit C	IPR004907	-	0.0	81%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AEB3

Fln msg: Distance to subject end: 244 aas, atg_distance in limit (1-15): atg_distance = 1, W2: There is no M at the beginning, your sequence is shorter than subject: 133 - 379

Fln protein: RRDLGCHSCLVSLPVQNSASSTWHLLQDGIFKNAFDLGFHFNIPDLRVGTLDSLLALSDDLSKANSFVEAVTHKIRRQIEELEKASGVESGVLTINGVPVDSYITRFTWDEAKYPVMSPLRELVDAIHDGVAK

Protein Length: 134

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTTTGGTATCGCTTCCTGTTCAGAATTCGGCATCCTCAACATGGCACCTCCTTCAGGATGGCATCTTCAAAAATGCGTTTGACCTTGGCTTTCACTTCAATATACCGGACCTCCGCGTGGGAACGCTGGATTCTCTACTGGCTCTCAGTGACGATCTGAGCAAGGCAAATTCCTTTGTGGAAGCAGTGACCCACAAGATTCGTCGGCAGATTGAGGAATTAGAGAAGGCTTCTGGTGTTGAATCGGGGGTGCTGACCATTAATGGCGTTCCTGTGGATTCTTACATTACCAGGTTTACTTGGGATGAAGCCAAGTACCCAGTCATGTCACCTCTCCGAGAACTTGTGGATGCCATACATGATGGTGTGGCGAAGTC

Fln Alignment:

sp_v1.1_unigene76933___CLVSLPVQNSASSTWHLLQDGIFKNAFDLG-FHFNIPDLRVGTXXXXXXXXXXXXKANSFVEAVTHKIRRQIEELEKASGVESGVLTINGVPVDSYITRFTWDEAKYPVMSPLRELVDAIHDGVAK
D5AEB3_______________CLVSLPVQNSATSTWHLLQDGIFKSAFDTSTYRLNIPDLRVGTLDSLLALSDDLNKANSFVEAVTHKIRRQIEELEKASGVESGVLTVHGVPVDSYITRFTWDEAKYPVMSPLRELVDAIHDGVGK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain