SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene76769

Length: 577 nt

Origin of reads: Biogeco_2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene76769
AAGGGGGACAAAGTGGATTTGATGAAAACCACGGTGAGGAGGAGCTCGAGGAGAGTGAACATGATTCAGCTCAAAAAACTAAACAAGACCAAACCCCATTGTGGAAATATGTTAACAAGCCTGAAGCAGGGAAAGGAGGTGGAACCACTAAATTTCATTGCCCCCATTGCAACAATAATTACACAGGTTCATACACCCGCGCCAGAAAACACCTCTGCAAGAAAAGGCCATGGGACAAAGATAAACAAATAGGAATCAAAACTTGTACAGGTGTGTCAGCAGCAAATAGAGCCAAATACATAAGGGAAGAGGAGAAAGCCCAATACAAATCTAAAAAATCAAAGGGTTTCTTTGAACCAAGCTCACAATCACATGCACAAAGAACTCCTTCAACATCCTCCTAAGGCAGTGGATATGGAGGCAGCGGGTCACCAAATTTAAGGCGTAGAAACATATCAAATTTCCTTGATGAAGGGTGTTGGAATGATGTGGATTCAAATGTTTACAGGTTTCTCTATGCATGTGGGATACCATTCAATGTTTTTCGCTCACCTTATTGGCACGAAATGGTTCCCAT

Ace file of the UniGene sp_v1.1_unigene76769 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein dimerization, putative n=1 Tax=Ricinus communis RepID=B9SN75_RICCO	-	-	2.0e-10	30%
FL-Next	tr=Protein dimerization, putative; Ricinus communis (Castor bean).	-	-	0.0	30%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: B9SN75

Fln msg: Distance to subject end: 492 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 191 - 633

Fln protein: GGQSGFDENHGEEELEESEHDSAQKTKQDQTPLWKYVNKPEAGKGGGTTKFHCPHCNNNYTGSYTRARKHLCKKRPWDKDKQIGIKTCTGVSAANRAKYIREEEKAQYKSKKSKGFFEPSSQSHAQRTPSTSS*GSGYGGSGSPNLRRRNISNFLDEGCWNDVDSNVYRFLYACGIPFNVFRSPYWHEMVP

Protein Length: 192

Fln nts: AAGGGGGACAAAGTGGATTTGATGAAAACCACGGTGAGGAGGAGCTCGAGGAGAGTGAACATGATTCAGCTCAAAAAACTAAACAAGACCAAACCCCATTGTGGAAATATGTTAACAAGCCTGAAGCAGGGAAAGGAGGTGGAACCACTAAATTTCATTGCCCCCATTGCAACAATAATTACACAGGTTCATACACCCGCGCCAGAAAACACCTCTGCAAGAAAAGGCCATGGGACAAAGATAAACAAATAGGAATCAAAACTTGTACAGGTGTGTCAGCAGCAAATAGAGCCAAATACATAAGGGAAGAGGAGAAAGCCCAATACAAATCTAAAAAATCAAAGGGTTTCTTTGAACCAAGCTCACAATCACATGCACAAAGAACTCCTTCAACATCCTCCTAAGGCAGTGGATATGGAGGCAGCGGGTCACCAAATTTAAGGCGTAGAAACATATCAAATTTCCTTGATGAAGGGTGTTGGAATGATGTGGATTCAAATGTTTACAGGTTTCTCTATGCATGTGGGATACCATTCAATGTTTTTCGCTCACCTTATTGGCACGAAATGGTTCCCAT

Fln Alignment:

sp_v1.1_unigene76769___KGGGTTKFHCPHCNNNYTGSYTRARKHLCKKRPWDKDKQIGIKTCTGVSAANRAKY-IREEEKAQYKSKKSKGFFEPSSQSHAQRTPSTXXXXXXXXXXXSPNLRRRNISNFLDEGCWNDVDSNVYRFLYACGIPFNVFRSPYWHEMV
B9SN75_______________RGSGTKRWKCNHCNLRYNGSYSRVRAHLL------GFSGVGVKSCPAIDRSLREAFQILEEERLVRKKKKNSANGKPGKRTRISQA----------------SISWKTITK-------EDVDDIVARFFYADGLNIDVVNSPYFHEMV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain