SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene76684

Length: 353 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene76684
CGTCGTGACCTTGGCTGTCACGTCGTGACCTTGGCTGTCACTCATTTTTTTTGAGAAGGATGAATGCAGTGCAGGAAGAGGAATGGCGAAAAGCACAAGAGATTAGCTTCAGCGTGGATCTGGATCTGATCAGTGCGGCAAAACAGCATCTACTGTTTCTTGCTTCCGTCGATCGGTATCGATGCCTTTACCATGGACCAGCTTTACAGAGAGCCATTTACAGGTACGAGCAGTGCTGGCTTCCATTGCTTGCTGAGCACACAGAATCCGGCAATGCAAATTTTCGGCTTGTTGTTCCTCTCGACTGTGAATGGATCTGGCACTGTCACAGGCTCAATCCAGTCCAATACGGA

Ace file of the UniGene sp_v1.1_unigene76684

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glycine-rich protein n=1 Tax=Medicago truncatula RepID=A9YWR4_MEDTR	-	-	9.0e-30	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Blast2go	glycine-rich protein	-	-	0.0	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein of unknown function DUF1399	IPR009836	-	0.0	75%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LME0

Fln msg: Distance to subject end: 717 aas, your sequence is shorter than subject: 98 - 815

Fln protein: MNAVQEEEWRKAQEISFSVDLDLISAAKQHLLFLASVDRYRCLYHGPALQRAIYRYEQCWLPLLAEHTESGNANFRLVVPLDCEWIWHCHRLNPVQYG

Protein Length: 99

Fln nts: CGTCGTGACCTTGGCTGTCACGTCGTGACCTTGGCTGTCACTCATTTTTTTTGAGAAGG_-_ATGAATGCAGTGCAGGAAGAGGAATGGCGAAAAGCACAAGAGATTAGCTTCAGCGTGGATCTGGATCTGATCAGTGCGGCAAAACAGCATCTACTGTTTCTTGCTTCCGTCGATCGGTATCGATGCCTTTACCATGGACCAGCTTTACAGAGAGCCATTTACAGGTACGAGCAGTGCTGGCTTCCATTGCTTGCTGAGCACACAGAATCCGGCAATGCAAATTTTCGGCTTGTTGTTCCTCTCGACTGTGAATGGATCTGGCACTGTCACAGGCTCAATCCAGTCCAATACGGA

Fln Alignment:

sp_v1.1_unigene76684___MNAVQEEEWRKAQEISFSVDLDLISAAKQHLLFLASVDRYRCLYHGPALQRAIYRYEQCWLPLLAEHTESGNANFRLVVPLDCEWIWHCHRLNPVQYG
B8LME0_______________MNAVQEEEWRKAQEISISVDLDLISAAKQHLLFLASVDRYRCLYDGPALQRAIYRYEQCWLPLLAEHTESGNAKFQLVVPLDCEWIWHCHRLNPVQYG

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
30		66		33	0.997476
31		66		33	0.997476
41		66	33		0.997471
43	33	66			0.997467

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain