SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene76663

Length: 358 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene76663
CGTCGTGACCTTGGCTGTCACTCAATTGTGTTTTTCAGTTTTGGCTAATTCTTTCAACGCGACTGCTGCAATCATTTCCGTTTGATTATCTTCAGGTTTTGTATTGTGTTGATTTCATTTAAAGATGCAGATATTTGTGAAGACCTTGACCGGTAAGACCATAACCCTTGAGGTGGAGAGCTCTGATACCATTGACAATGTAAAGGCCAAGATTCAGGACAAAGAGGGAATTCCACCAGACCAGCAGCGTCTCATCTTGCCGGTAAGCAGTTGGAAGATGGGCGCACTCTCGCCCTTTCGCATTGAGTGGGAGTCCACTCTTCACCTTGTCCTCCGTCTTAGAGGTGGGATGCAGATC

Ace file of the UniGene sp_v1.1_unigene76663

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	polyubiquitin containing 7 ubiquitin monomers	-	-	1.0e-25	80%
FL-Next	tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	79%
Blast2go	ubiquitin	-	-	3.9785e-26	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	positive regulation of cellular transcription, DNA-dependent	GO:0045941	Biological Process	3.9785e-26	83%
Blast2go	induction of apoptosis by extracellular signals	GO:0008624	Biological Process	3.9785e-26	83%
Blast2go	anti-apoptosis	GO:0006916	Biological Process	3.9785e-26	83%
Blast2go	positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle	GO:0051437	Biological Process	3.9785e-26	83%
Blast2go	anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145	Biological Process	3.9785e-26	83%
Blast2go	negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle	GO:0051436	Biological Process	3.9785e-26	83%
Blast2go	transcription regulator activity	GO:0030528	Molecular Function	3.9785e-26	83%
Blast2go	protein binding	GO:0005515	Molecular Function	3.9785e-26	83%
Blast2go	nucleoplasm	GO:0005654	Cellular Component	3.9785e-26	83%
Blast2go	cytosol	GO:0005829	Cellular Component	3.9785e-26	83%
Blast2go	endosome membrane	GO:0010008	Cellular Component	3.9785e-26	83%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: Q7FPA4

Fln msg: STOP codon was not found. Distance to subject end: 2 aas, your sequence is shorter than subject: 78 - 229

Fln protein: MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLILPVSSWKMGALSPFRIEWESTLHLVLRLRGGMQI

Protein Length: 79

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTGTGTTTTTCAGTTTTGGCTAATTCTTTCAACGCGACTGCTGCAATCATTTCCGTTTGATTATCTTCAGGTTTTGTATTGTGTTGATTTCATTTAAAG_-_ATGCAGATATTTGTGAAGACCTTGACCGGTAAGACCATAACCCTTGAGGTGGAGAGCTCTGATACCATTGACAATGTAAAGGCCAAGATTCAGGACAAAGAGGGAATTCCACCAGACCAGCAGCGTCTCATCTTGCCGGTAAGCAGTTGGAAGATGGGCGCACTCTCGCCCTTTCGCATTGAGTGGGAGTCCACTCTTCACCTTGTCCTCCGTCTTAGAGGTGGGATGCAGATC

Fln Alignment:

sp_v1.1_unigene76663___MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLILPVSSWKMG-ALSPFRIEWESTLHLVLRLRGGMQI
Q7FPA4_______________MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain