SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene76628

Length: 378 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene76628
CGTCGTGACCTTGGCTGTCACTCATTTAACTCAGGTGGCAGCAAAGTGTGTTCCCAAGGGCCTGCACTGTCTGTCCATGTGATTGGCCATAGATTATTACTTTCTTCCTCTTGAAAAGCGATAATTTCCTAAAAAGGACAAGTAGGAGGATCCGACTCTTTATCACTATGTATCTGTGGCTGTGAATTCAACTGTCATGAATGCTAAGGAATCTGAGAAACATGTATTTCATCTCATCACAGACAAGTTAAATTTTGGGGCCATGAAAATGTGGTTTTTACTTAATCCCCCAGGGAAAGCTGTGATACATGTAGAAAATGTAGATGATTTTTAATGGATCAATTCCTCCTATTGCCATTTCGCAGTGAGTGACAGGCC

Ace file of the UniGene sp_v1.1_unigene76628

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glycosyltransferase n=1 Tax=Populus trichocarpa RepID=B9GPT1_POPTR	-	-	2.99878e-43	69%
FL-Next	sp=Alpha-1,4-galacturonosyltransferase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	65%
Blast2go	glycosyl transferase family 8	-	-	6.1517e-43	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LE59

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 227 aas, your sequence is shorter than subject: 111 - 673

Fln protein: VVTLAVTHLTQVAAKCVPKGLHCLSM*LAIDYYFLPLEKR*FPKKDK*EDPTLYHYVSVAVNSTVMNAKESEKHVFHLITDKLNFGAMKMWFLLNPPGKAVIHVENVDDF*

Protein Length: 112

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTAACTCAGGTGGCAGCAAAGTGTGTTCCCAAGGGCCTGCACTGTCTGTCCATGTGATTGGCCATAGATTATTACTTTCTTCCTCTTGAAAAGCGATAATTTCCTAAAAAGGACAAGTAGGAGGATCCGACTCTTTATCACTATGTATCTGTGGCTGTGAATTCAACTGTCATGAATGCTAAGGAATCTGAGAAACATGTATTTCATCTCATCACAGACAAGTTAAATTTTGGGGCCATGAAAATGTGGTTTTTACTTAATCCCCCAGGGAAAGCTGTGATACATGTAGAAAATGTAGATGATTTTTAATGGATCAATTCCTCCTATTGCCATTTCGCAGTGAGTGACAGGCC

Fln Alignment:

sp_v1.1_unigene76628___THLTQVAAKCVPKGLHCLSM*LAIDYYFLPLEKR*FPKKDK*EDPTLYHYV---------SVAVNSTVMNAKESEKHVFHLITDKLNFGAMKMWFLLNPPGKAVIHVENVDDF*WINSSYC
Q9LE59_______________TFLAQLAAKTIPNPIHCLSMRLTIDYYLLSPEKRKFPRSENLENPNLYHYALFSDNVLAASVVVNSTIMNAKDPSKHVFHLVTDKLNFGAMNMWFLLNPPGKATIHVENVDEFKWLNSSYC

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
36		33	66		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain