SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene76612

Length: 571 nt

UniGene Fasta

>sp_v1.1_unigene76612
CGTCGTGACCTTGGCTGTCACTCAAACTTTCTTCTACTAGCTGGTTACCTGAAACTGTTACCTATTGAACTTATTCAAGCATTTGGAAGATCAATTTTGAACATTCATCCATCTCTTCTTCCTGCTTTTGGAGGCAAAGGTTATTATGGGATGAACGTGCATAAAGCTGTTATTGCATCTGGAGCCAGATTTTCAGGCCCTACAGTCCACTTTGTAGATGAAAAGTATGATACTGGTAGAATCCTCGCTCAACGAGTTGTTCCTGTTCTAGCAAATGACACCGTCGTGGCCTTGGCTGCACGGGTCTTGCAAGAGGTATGGGAAAAGCTTACCCTCTGTGTTATATTTGTCTCATCATTTTTTCAACTGGCAACAAAATAGCCAGATTCCAGAGTAGAAGTGTGTTCTTTTAATTTTGTACTTGTAGTTCCGCAATCTTTGCTTAGGTAATATTTTTGCTTTCCCTTTGAATCACAACATTTCTTTAATCGTGAGTGAGAAATTTCAATTATATCAGAAATATTACAAGCATTATACAACAAAAATGAGACCTCGGGAGTCTTAGGTAATA

Ace file of the UniGene sp_v1.1_unigene76612

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Phosphoribosylglycinamide formyltransferase, chloroplastic n=1 Tax=Vigna unguiculata RepID=PUR3_VIGUN	-	-	9.99995e-41	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	32%
Blast2go	glycinamide ribonucleotide transformylase	-	-	1.87868e-40	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	intracellular membrane-bounded organelle	GO:0043231	Cellular Component	1.87868e-40	88%
Blast2go	cytoplasmic part	GO:0044444	Cellular Component	1.87868e-40	88%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Phosphoribosylglycinamide formyltransferase, active site	IPR001555	-	1.87868e-40	88%
Blast2go	Formyl transferase, N-terminal	IPR002376	-	1.87868e-40	88%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRL4

Fln msg: your sequence is shorter than subject: 127 - 350

Fln protein: RRDLGCHSNFLLLAGYLKLLPIELIQAFGRSILNIHPSLLPAFGGKGYYGMNVHKAVIASGARFSGPTVHFVDEKYDTGRILAQRVVPVLANDTVVALAARVLQEVWEKLTLCVIFVSSFFQLATK*

Protein Length: 128

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAACTTTCTTCTACTAGCTGGTTACCTGAAACTGTTACCTATTGAACTTATTCAAGCATTTGGAAGATCAATTTTGAACATTCATCCATCTCTTCTTCCTGCTTTTGGAGGCAAAGGTTATTATGGGATGAACGTGCATAAAGCTGTTATTGCATCTGGAGCCAGATTTTCAGGCCCTACAGTCCACTTTGTAGATGAAAAGTATGATACTGGTAGAATCCTCGCTCAACGAGTTGTTCCTGTTCTAGCAAATGACACCGTCGTGGCCTTGGCTGCACGGGTCTTGCAAGAGGTATGGGAAAAGCTTACCCTCTGTGTTATATTTGTCTCATCATTTTTTCAACTGGCAACAAAATAG___CCAGATTCCAGAGTAGAAGTGTGTTCTTTTAATTTTGTACTTGTAGTTCCGCAATCTTTGCTTAGGTAATATTTTTGCTTTCCCTTTGAATCACAACATTTCTTTAATCGTGAGTGAGAAATTTCAATTATATCAGAAATATTACAAGCATTATACAACAAAAATGAGACCTCGGGAGTCTTAGGTAATA

Fln Alignment:

sp_v1.1_unigene76612___SNFLLLAGYLKLLPIELIQAFGRSILNIHPSLLPAFGGKGYYGMNVHKAVIASGARFSGPTVHFVDEKYDTGRILAQRVVPVLANDTVVALA
B8LRL4_______________TDFLVLARYMQILSRKFLESYEKDIINIHHGLLPSFKGG-----NPFRQAFDVGVKLIGATSHFITEELDGGPIIEQMVERITHRDTLLSFA

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain