SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene76587

Length: 483 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene76587
TCTCAAGCCAGACATCAGCGCACCAGGTCTGAACATCATTGCTGCATGGGATCCTCCCGATACGGGATTTATAGACACAGTTCTTTCAGAGACGATGTCTACCACATTTTTACATGATGTCTGGAACTTCTGTAGCAGTTCCTCATGTTAGCGGAGCTGCTGGATTTTTAAAATCTATGAATCCTACTTGGAGCCCCTCTGTTATCAGATCAGCCCTGATGACAACAGCCATTGTTAGGAACAATATGGGAAAATTTTTGAATGGGACGCCATTTGATTTTGGAGCGGGAGTGGTAAATCCAATCGGAGCTCTGCAACCAGGACTTGTATATGAAACAAAAATCGATGATTACTTCCACTTTCTGTGTAATTACGGTCTGGACACTGAGAATATCAAACTCATCGCTGCGAATAAAACCTATAGGTGTCCATCCGGTGCAAAGGTGGATCTGATCAGTAACATGAACTATCCAAGTATAGCCA

Ace file of the UniGene sp_v1.1_unigene76587

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Subtilisin-like protein n=1 Tax=Picea abies RepID=Q40764_PICAB	-	-	81%
FL-Next	tr=Subtilisin-like protein; Picea abies (Norway spruce) (Picea excelsa).	-	-	66%
Blast2go	xylem serine proteinase 1	-	-	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	apoplast	GO:0048046	Cellular Component	0.0	66%

Source	InterPros	Term	Type	Identity
Blast2go	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	66%
Blast2go	Peptidase S8, subtilisin-related	IPR015500	-	66%
Blast2go	Peptidase S8, subtilisin, Ser-active site	IPR023828	-	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q40764

Fln msg: Overlapping hits, possible frame ERROR between 109 and 108, Distance to subject end: 95 aas, your sequence is shorter than subject: 161 - 779

Fln protein: LKPDISAPGLNIIAAWDPPDTGFIDTVLSETMSTTxxYMMSGTSVAVPHVSGAAGFLKSMNPTWSPSVIRSALMTTAIVRNNMGKFLNGTPFDFGAGVVNPIGALQPGLVYETKIDDYFHFLCNYGLDTENIKLIAANKTYRCPSGAKVDLISNMNYPSIA

Protein Length: 162

Fln nts: TCTCAAGCCAGACATCAGCGCACCAGGTCTGAACATCATTGCTGCATGGGATCCTCCCGATACGGGATTTATAGACACAGTTCTTTCAGAGACGATGTCTACCACAxxxxxxTACATGATGTCTGGAACTTCTGTAGCAGTTCCTCATGTTAGCGGAGCTGCTGGATTTTTAAAATCTATGAATCCTACTTGGAGCCCCTCTGTTATCAGATCAGCCCTGATGACAACAGCCATTGTTAGGAACAATATGGGAAAATTTTTGAATGGGACGCCATTTGATTTTGGAGCGGGAGTGGTAAATCCAATCGGAGCTCTGCAACCAGGACTTGTATATGAAACAAAAATCGATGATTACTTCCACTTTCTGTGTAATTACGGTCTGGACACTGAGAATATCAAACTCATCGCTGCGAATAAAACCTATAGGTGTCCATCCGGTGCAAAGGTGGATCTGATCAGTAACATGAACTATCCAAGTATAGCCA

Fln Alignment:

sp_v1.1_unigene76587___LKPDISAPGLNIIAAWDPPDTGFIDTVLSETMSTTxYMMSGTSVAVPHVSGAAGFLKSMNPTWSPSVIRSALMTTAIVRNNMGKFLN------GTPFDFGAGVVNPIGALQPGLVYETKIDDYFHFLCNYGLDTENIKLIAANKTYRCPSGAKVDLISNMNYPSIA
Q40764_______________LKPDISAPGVNIIAAWNPPNQSDEDTVVSEMTPSTxNMMSGTSVAVPHVTGAAAFVKSINPTWSSSAIRSALMTTAIVRNNMGKLLTNESDIPGTPFDFGAGVVNPIGALQPGLVYETSIDDYFHFLCNYGLDSENIKIIAANESYKCPSGVNADLISNMNYPSIA

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain