SustainPineDB

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Assembly info
Unigenes
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene76579

Length: 448 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene76579
ATGGGTTGTGCACATGTAAAGGATATTGCGAAAGCCCAAATACTACTATATGAAACGCCTTCAGCCTCTGGGAGGCACCTTTGTGTTGAGACTATAGCCCATTGGAGCGATTTCGCTGAGTTGACTGCAAAACTATATCCAGAATATAATGTGCACAAGTAATCTCTAAATCTCGCTCGAAGAACAAAGTATCCTTCTATTAAAGTTATTGTTTTAAAGTTATTTGAGATTTCATGATTATTTCATTCTTGCTAAAGATAATTTGATTTCTTCTTTATAAGTCTTGTAGCTTACAATTTCATGTCATTGATAATTTGATTTCTACTTCATAAGCCTTGTAGCATACAATTTCATGTCATTTATGCCTTGGACTTACATGGGTTCTTGAATGTTTTTATAGGTTTACAAGTGTCACACAACCAGGCTTGGTACGTGTTGGGAATCCACC

Ace file of the UniGene sp_v1.1_unigene76579 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cinnamoyl-CoA reductase n=1 Tax=Camellia oleifera RepID=C3VPA5_9ERIC	-	-	2.0e-12	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%
Blast2go	cinnamoyl- reductase	-	-	1.09184e-23	80%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NN98

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 49 aas, putative chimeric sequence, your sequence is shorter than subject: 54 - 126

Fln protein: MGCAHVKDIAKAQILLYETPSASGRHLCVETIAHWSDFAELTAKLYPEYNVHK*

Protein Length: 55

Fln nts: ATGGGTTGTGCACATGTAAAGGATATTGCGAAAGCCCAAATACTACTATATGAAACGCCTTCAGCCTCTGGGAGGCACCTTTGTGTTGAGACTATAGCCCATTGGAGCGATTTCGCTGAGTTGACTGCAAAACTATATCCAGAATATAATGTGCACAAGTAA___TCTCTAAATCTCGCTCGAAGAACAAAGTATCCTTCTATTAAAGTTATTGTTTTAAAGTTATTTGAGATTTCATGATTATTTCATTCTTGCTAAAGATAATTTGATTTCTTCTTTATAAGTCTTGTAGCTTACAATTTCATGTCATTGATAATTTGATTTCTACTTCATAAGCCTTGTAGCATACAATTTCATGTCATTTATGCCTTGGACTTACATGGGTTCTTGAATGTTTTTATAGGTTTACAAGTGTCACACAACCAGGCTTGGTACGTGTTGGGAATCCACC

Fln Alignment:

sp_v1.1_unigene76579___MGCAHVKDIAKAQILLYETPSASGRHLCVETIAHWSDFAELTAKLYPEYNVHK
A9NN98_______________MGCAHVKDIAKAQILLYETPSASGRHLCVESIAHWSDFAELTAKLYPEYNVHK

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
196	66		33		0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain