SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene76547

Length: 430 nt

UniGene Fasta

>sp_v1.1_unigene76547
TGATAAAACTAATGTATTTGAAGGCTGTGATGCTAAACAAAAAGCTGATTTAGTTAAAGTTGTTTCAAAATATGATATCCTATTTCAAGAACCTAAAGGTCCGCCACCCAAAAGGGAAATAGTACATGATATTCATTTGCAGCAAGATGCTCCATTGCCTAACTTCGGAATGTACAGGTTATCCGCTTTAGAGAATGCAGAGATCAAGAAGCAGGTATAGGAGTTGCTCGATAAAGGGTTCATAAGGCCAAGCACATCACCATGTGGATCTCCAATTGTGTTGGTGAGAGAGAAAGATGGTTCATGGAGGATGTGTATTGATTATAGAGCACTGAATAAAATAACGATCAAGAATTGTTATCCTCTTTTTCGCATTGATGATCTATTAGATCAGTTGAAAGAAGCATGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene sp_v1.1_unigene76547

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Retrotransposon protein, putative, Ty3-gypsy subclass n=4 Tax=Oryza sativa RepID=Q109C6_ORYSJ	-	-	2.0e-27	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%
Blast2go	retrotransposon ty3-gypsy subclass	-	-	2.76e-27	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	2.76e-27	67%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWN2

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 17 aas, W1: There is no M at the beginning,

Fln protein: ELLDKGFIRPSTSPCGSPIVLVREKDGSWRMCIDYRALNKITIKNCYPLFRIDDLLDQLKEA*

Protein Length: 64

Fln nts: TGATAAAACTAATGTATTTGAAGGCTGTGATGCTAAACAAAAAGCTGATTTAGTTAAAGTTGTTTCAAAATATGATATCCTATTTCAAGAACCTAAAGGTCCGCCACCCAAAAGGGAAATAGTACATGATATTCATTTGCAGCAAGATGCTCCATTGCCTAACTTCGGAATGTACAGGTTATCCGCTTTAGAGAATGCAGAGATCAAGAAGCAGGTATAGGAGTTGCTCGATAAAGGGTTCATAAGGCCAAGCACATCACCATGTGGATCTCCAATTGTGTTGGTGAGAGAGAAAGATGGTTCATGGAGGATGTGTATTGATTATAGAGCACTGAATAAAATAACGATCAAGAATTGTTATCCTCTTTTTCGCATTGATGATCTATTAGATCAGTTGAAAGAAGCATGA___GTGACAGCCAAGGTCACGACG

Fln Alignment:

sp_v1.1_unigene76547___SPIVLVREKDGSWRMCIDYRALNKITIKNCYPLFRIDDLLDQL
A9NWN2_______________TPIILVRINDGSYILCNNCRVLNEITIKDKFHISIVDELLDEL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain