SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene76513

Length: 439 nt

UniGene Fasta

>sp_v1.1_unigene76513
CGTCGTGACCTTGGCTGTCACTCAATCCCTTAACAGCTATTCATTAGCACTACTGTAATAGCACCTCCATGCGTCCCGGGTTCAAATCCTCTTACAATCACAATCCTTTGTTTTACATAATTATTTAACTTCACCACCAATCTGTCACTTCGATTCCTCATATCTTTGCAACGACCCAATGGCTAAATCCTCTTCACATCAGAACGACCGCAGCAGACTCGAAAACCGCTCACTGCAGTCACGGCGATTCACGGGAATTCGAATGAGAAAATGGGGGAAATGGGTATCCGAAATTCGGATGCCCAATTCCAGGTACAGAATTTGGCTGGGCTCCTACGACACCCCGGAAAAAGCTGCCCGTGCTTACGACTTTGCTGTGTATTGTCTGAGAGGATCCAACGCCAACTTCAATTTTCCCGTTCGCAGTGAGTGACAGGCC

Ace file of the UniGene sp_v1.1_unigene76513

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AP2/ERF domain-containing transcription factor n=1 Tax=Populus trichocarpa RepID=A9PLA3_POPTR	-	-	8.0e-23	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Blast2go	ap2 erf domain-containing transcription factor	-	-	1.30683e-29	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to wounding	GO:0009611	Biological Process	1.30683e-29	81%
Blast2go	response to biotic stimulus	GO:0009607	Biological Process	1.30683e-29	81%
Blast2go	cellular transcription, DNA-dependent	GO:0006350	Biological Process	1.30683e-29	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	AP2/ERF domain	IPR001471	-	1.30683e-29	81%
Blast2go	DNA-binding, integrase-type	IPR016177	-	1.30683e-29	81%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPP6

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 102 aas, your sequence is shorter than subject: 85 - 189

Fln protein: MAKSSSHQNDRSRLENRSLQSRRFTGIRMRKWGKWVSEIRMPNSRYRIWLGSYDTPEKAARAYDFAVYCLRGSNANFNFPVRSE*

Protein Length: 86

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCCCTTAACAGCTATTCATTAGCACTACTGTAATAGCACCTCCATGCGTCCCGGGTTCAAATCCTCTTACAATCACAATCCTTTGTTTTACATAATTATTTAACTTCACCACCAATCTGTCACTTCGATTCCTCATATCTTTGCAACGACCCA_-_ATGGCTAAATCCTCTTCACATCAGAACGACCGCAGCAGACTCGAAAACCGCTCACTGCAGTCACGGCGATTCACGGGAATTCGAATGAGAAAATGGGGGAAATGGGTATCCGAAATTCGGATGCCCAATTCCAGGTACAGAATTTGGCTGGGCTCCTACGACACCCCGGAAAAAGCTGCCCGTGCTTACGACTTTGCTGTGTATTGTCTGAGAGGATCCAACGCCAACTTCAATTTTCCCGTTCGCAGTGAGTGACAGGCC

Fln Alignment:

sp_v1.1_unigene76513___MAKSSSHQNDRSRLENRSLQSRRFTGIRMRKWGKWVSEIRMPNSRYRIWLGSYDTPEKAARAYDFAVYCLRGSNANFNFP
B8LPP6_______________MAKPSSDQKGHSKPQKCSLKSRQFKGIRMRKWGKWVSEIRMPNSRDKIWLGSYDTPEKAARAYDFAVYCLRGSKAKFNFP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain