SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene76508

Length: 553 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene76508
CGTCGTGACCTTGGCTGTCAAAGATGTCAGGGAACTGGAACTTCCACCGTTCGACTACGTGCCGCGGCTTTACAAAGGCCCCTCCGCCGATGAGGTTCTGCAAAAGAGGAAGTTTAAGTTCCTTGGCCCCTCTCTCTTCTATTATTACCAGAAGCCTCTGAACATTGTCGTCGTGACCTTGGCTGTCACTCATGTTTGATGAGAATGGACGTCGATATCTTGATGCTTTTGCAGGTATTGTGACAGTTTCCTGTGGGCATTGCCATCCAGATATTCTAGAAGCCATCAGGAATCAAAATGAATTACTGCAGCATGCTACAACAATATACCTTCATCATGCAATAGGAGTTTTTGCAGAGGCACTAGCTTCCAAAATTGCCCGGAAATCTCAAGGTCTTCCCTCTCAATACCAAAGTTTGATGACAGCAGTGGTAAAAGTATTGTTTTGTATCTTATCAATTAGCATTTGGAAGTTGTTCAGAGGTCAGCCAGGTGCTAATTTGTGAAATTTTATGGGGTATATGCGTGAATATCATGGATTGGATACTGTGAT

Ace file of the UniGene sp_v1.1_unigene76508

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AGT2; AGT2 (ALANINE:GLYOXYLATE AMINOTRANSFERASE 2); alanine-glyoxylate transaminase/ catalytic/ pyridoxal phosphate binding / transaminase; K00827 alanine--glyoxylate transaminase / (R)-3-amino-2-methylpropionate-pyruvate transaminase [EC:2.6.1.44 2.6.1.4	-	-	9.0e-39	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Blast2go	at4g39660 t19p19_50	-	-	3.8228e-39	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Alanine--glyoxylate transaminase.	EC:2.6.1.44	-	3.8228e-39	88%

Source	KEGGs	Term	e value	Identity
Blast2go	Alanine, aspartate and glutamate metabolism	00250	3.8228e-39	88%
Blast2go	Glycine, serine and threonine metabolism	00260	3.8228e-39	88%
Blast2go	Metabolic pathways	01100	3.8228e-39	88%

Source	ECs	Term	Type	e value	Identity
AutoFact	Alanine--glyoxylate transaminase.	EC:2.6.1.44	-	9.0e-39	82%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Alanine, aspartate and glutamate metabolism	00250		9.0e-39	82%
AutoFact	Glycine, serine and threonine metabolism	00260		9.0e-39	82%
AutoFact	Metabolic pathways	01100		9.0e-39	82%
AutoFact		EC:2.6.1.4-	-	9.0e-39	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	arginine catabolic process to glutamate	GO:0019544	Biological Process	3.8228e-39	88%
Blast2go	alanine-glyoxylate transaminase activity	GO:0008453	Molecular Function	3.8228e-39	88%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	3.8228e-39	88%
Blast2go	plasma membrane	GO:0005886	Cellular Component	3.8228e-39	88%
Blast2go	mitochondrion	GO:0005739	Cellular Component	3.8228e-39	88%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NW66

Fln msg: Separated hits, possible frame ERROR between 166 and 192, Unexpected STOP codon at 3' end. Distance to subject end: 267 aas, your sequence is shorter than subject: 169 - 482

Fln protein: VVTLAVKDVRELELPPFDYVPRLYKGPSADEVLQKRKFKFLGPSLFYYYQKPLNxxxxxxxxxxMFDENGRRYLDAFAGIVTVSCGHCHPDILEAIRNQNELLQHATTIYLHHAIGVFAEALASKIARKSQGLPSQYQSLMTAVVKVLFCILSISIWKLFRGQPGANL*

Protein Length: 170

Fln nts: CGTCGTGACCTTGGCTGTCAAAGATGTCAGGGAACTGGAACTTCCACCGTTCGACTACGTGCCGCGGCTTTACAAAGGCCCCTCCGCCGATGAGGTTCTGCAAAAGAGGAAGTTTAAGTTCCTTGGCCCCTCTCTCTTCTATTATTACCAGAAGCCTCTGAACATxxxxxxxxxxxxxxxxxxxxxxxxxxxCATGTTTGATGAGAATGGACGTCGATATCTTGATGCTTTTGCAGGTATTGTGACAGTTTCCTGTGGGCATTGCCATCCAGATATTCTAGAAGCCATCAGGAATCAAAATGAATTACTGCAGCATGCTACAACAATATACCTTCATCATGCAATAGGAGTTTTTGCAGAGGCACTAGCTTCCAAAATTGCCCGGAAATCTCAAGGTCTTCCCTCTCAATACCAAAGTTTGATGACAGCAGTGGTAAAAGTATTGTTTTGTATCTTATCAATTAGCATTTGGAAGTTGTTCAGAGGTCAGCCAGGTGCTAATTTGTGAAATTTTATGGGGTATATGCGTGAATATCATGGATTGGATACTGTGAT

Fln Alignment:

sp_v1.1_unigene76508___ELPPFDYVPRLYKGPSADEVLQKRKFKFLGPSLFYYYQKPLNIxxxxxxxxxMFDENGRRYLDAFAGIVTVSCGHCHPDILEAIRNQNELLQHATTIYLHHAIGVFAEALASKI
A9NW66_______________QMPAFDYKPQPYTGPLADEILKKRK-QFLGPSNFYFYDKPLNIxxxxxxxxxLFDEDGRRYLDAFAGIVCISCGHCHPEVVDTIVKQTKLLQHTTTIYLHHAVTELAEALAAKM

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
169		66		33	0.997476
177	33	66			0.997476
178		66	33		0.997476
179	33			66	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain