SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene76480

Length: 572 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene76480
GCGAGCTTCTCTCCCTTCACAGCGAGCTTCTCTCCCTTCTGGCAGTGGGTTAGATTGCCGCTGTGGCCCCATTCTTCGGATGCAGTGGCAATTTCAACAGCCGGTGCCGCCATGATCGTATTAAGTGGCATTTCAGTTAGATCTGCCACAGAAAATTGTAGGTTCCATTACAGAAATATTCATAATCGTATCGAGTCTATAATGCTGGAAAGGTGCTTGTTCGTCATTATATTTGGAGTTAGATAATCAGAAGAGGTGGGGTTCTTCTAATAAGGATGTTCTCATAAGATCACAGATTCCAGAGACGTCGATTTACAGGCTACAAGGTCTCGAACCAGAGCATTCCCGAGAGCTCTTTTGCTGGCATGCATTTGGCAGGCCTCATCCTGCTGTCGGATTTCGGGTCCCTTCTGCTTTCTTTGTTTACGGCCCACGCGAGTTGGTGGTGCATTTCTTCTCCTTCTTGTCGTCCTGCTTGTGGTCGTCTGGGGATCCCTTGCGATTCAGGCCACCGCCGTGCGCTTGCCCCATTGCCTCATTCGAACTCGGACCAGAATTCGACCTGTGAAATG

Ace file of the UniGene sp_v1.1_unigene76480

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative NBS-LRR protein G6236 (Fragment) n=2 Tax=Pinus monticola RepID=Q6WE71_PINMO	-	-	2.0e-10	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Blast2go	unknown [Picea sitchensis]	-	-	9.09387e-11	82%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQE2

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 608 aas, your sequence is shorter than subject: 189 - 1071

Fln protein: RASLPSQRASLPSGSGLDCRCGPILRMQWQFQQPVPP*SY*VAFQLDLPQKIVGSITEIFIIVSSL*CWKGACSSLYLELDNQKRWGSSNKDVLIRSQIPETSIYRLQGLEPEHSRELFCWHAFGRPHPAVGFRVPSAFFVYGPRELVVHFFSFLSSCLWSSGDPLRFRPPPCACPIASFELGPEFDL*

Protein Length: 190

Fln nts: GCGAGCTTCTCTCCCTTCACAGCGAGCTTCTCTCCCTTCTGGCAGTGGGTTAGATTGCCGCTGTGGCCCCATTCTTCGGATGCAGTGGCAATTTCAACAGCCGGTGCCGCCATGATCGTATTAAGTGGCATTTCAGTTAGATCTGCCACAGAAAATTGTAGGTTCCATTACAGAAATATTCATAATCGTATCGAGTCTATAATGCTGGAAAGGTGCTTGTTCGTCATTATATTTGGAGTTAGATAATCAGAAGAGGTGGGGTTCTTCTAATAAGGATGTTCTCATAAGATCACAGATTCCAGAGACGTCGATTTACAGGCTACAAGGTCTCGAACCAGAGCATTCCCGAGAGCTCTTTTGCTGGCATGCATTTGGCAGGCCTCATCCTGCTGTCGGATTTCGGGTCCCTTCTGCTTTCTTTGTTTACGGCCCACGCGAGTTGGTGGTGCATTTCTTCTCCTTCTTGTCGTCCTGCTTGTGGTCGTCTGGGGATCCCTTGCGATTCAGGCCACCGCCGTGCGCTTGCCCCATTGCCTCATTCGAACTCGGACCAGAATTCGACCTGTGAAATG

Fln Alignment:

sp_v1.1_unigene76480___SSNKDVLIRSQIPETSIYRLQGLEPEHSRELFCWHAFGRPHPAVGF
C0PQE2_______________SRNKDVLTSSGITESSIYRLKGLNRKHSQELFCFHAFGQPHPVVGF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain