SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene76440

Length: 349 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene76440
CGTCGTGACCTTGGCTGTCACTCATTTTGTTAAAATTCTGTGAGTGTCAATCGAAGCTTCTGTACTTGTCTGGTGTTTTTTGGGCACTCTTGAACAGAGCTTTTTAGATTCTGCCTGCAAACGAGGACAATTCATACGTATCTGGAATGAGTGCTGCGAAAGATTGGCATACTATGGATTCAGTTCAAATCTGGTGAACTATTTGACAGATAAGTTCAAGCAAGGCAATTCAACTGCAGCCAATAATGTCACAAATTGGTCTGGAACTTGTTACCTAACTCCTTTGATTGGAGCTTTTATGGCTGATGCGTACTGGGGACGTTATAAAACAATTGCTGTATTTCTATTG

Ace file of the UniGene sp_v1.1_unigene76440

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peptide transporter, putative n=1 Tax=Ricinus communis RepID=B9T6M4_RICCO	-	-	1.0e-25	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Blast2go	peptide transporter	-	-	1.529e-25	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	tripeptide transport	GO:0042939	Biological Process	1.529e-25	84%
Blast2go	dipeptide transport	GO:0042938	Biological Process	1.529e-25	84%
Blast2go	nitrogen compound metabolic process	GO:0006807	Biological Process	1.529e-25	84%
Blast2go	tripeptide transporter activity	GO:0042937	Molecular Function	1.529e-25	84%
Blast2go	dipeptide transporter activity	GO:0042936	Molecular Function	1.529e-25	84%
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.529e-25	84%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVR2

Fln msg: Distance to subject end: 465 aas, atg_distance in limit (1-15): atg_distance = 14, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 102 - 594

Fln protein: VSIEASVLVWCFLGTLEQSFLDSACKRGQFIRIWNECCERLAYYGFSSNLVNYLTDKFKQGNSTAANNVTNWSGTCYLTPLIGAFMADAYWGRYKTIAVFLL

Protein Length: 103

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTGTTAAAATTCTGTGAGTGTCAATCGAAGCTTCTGTACTTGTCTGGTGTTTTTTGGGCACTCTTGAACAGAGCTTTTTAGATTCTGCCTGCAAACGAGGACAATTCATACGTATCTGGAATGAGTGCTGCGAAAGATTGGCATACTATGGATTCAGTTCAAATCTGGTGAACTATTTGACAGATAAGTTCAAGCAAGGCAATTCAACTGCAGCCAATAATGTCACAAATTGGTCTGGAACTTGTTACCTAACTCCTTTGATTGGAGCTTTTATGGCTGATGCGTACTGGGGACGTTATAAAACAATTGCTGTATTTCTATTG

Fln Alignment:

sp_v1.1_unigene76440___NECCERLAYYGFSSNLVNYLTDKFKQGNSTAANNVTNWSGTCYLTPLIGAFMADAYWGRYKTIAVF
A9NVR2_______________NECCERLAYYGINTNLVTYLTKRLHQGNAAAAKSVTTWAGTCYLTPLFGAVLADAYWGRYWTIAAF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain