SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene76410

Length: 367 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

>sp_v1.1_unigene76410
AATTTATAGATGACCTGGCATAATGACATATCAAGAGAAGCCAGATTATGCACGTTGTGGCCTTGGTTGTCACTGCTTCACTTCGGGAGATGATAAAGCCTGGTGCTTTAGCAGTTGTATCTCCTGTTTTAATTGGTGTCTCATTTAAGATTCTGGGTCAGTATACAGATCAGCCTTTACTTGGTGCCAAAGTTGTTGCTTCAATGCTAATGTTTGCAACGGTCTCTGGTATTCTCATGGCCTTGTTTTGAATACTGCTGGAGGTGCTTGGGATAATGCAAAGAAATACATAGAAAGTGGTGCTCTTGGTGGAAAAGGAAGTGAAGCTCACAAGGCAGCTATTACAGGAGACACAGTTGGAGATCCA

Ace file of the UniGene sp_v1.1_unigene76410

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative vacuolar-type H+-t (ISS) n=1 Tax=Ostreococcus tauri RepID=Q01AK1_OSTTA	-	-	4.0e-37	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	34%
Blast2go	h+-translocating pyrophosphatase family	-	-	7.50934e-37	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pyrophosphate-energised proton pump	IPR004131	-	7.50934e-37	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRN4

Fln msg: Separated hits, possible frame ERROR between 245 and 251, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 37 aas, your sequence is shorter than subject: 122 - 764

Fln protein: FIDDLA**HIKRSQIMHVVALVVTASLREMIKPGALAVVSPVLIGVSFKILGQYTDQPLLGAKVVASMLMFATVSGILMAxxxNTAGGAWDNAKKYIESGALGGKGSEAHKAAITGDTVGDP

Protein Length: 123

Fln nts: AATTTATAGATGACCTGGCATAATGACATATCAAGAGAAGCCAGATTATGCACGTTGTGGCCTTGGTTGTCACTGCTTCACTTCGGGAGATGATAAAGCCTGGTGCTTTAGCAGTTGTATCTCCTGTTTTAATTGGTGTCTCATTTAAGATTCTGGGTCAGTATACAGATCAGCCTTTACTTGGTGCCAAAGTTGTTGCTTCAATGCTAATGTTTGCAACGGTCTCTGGTATTCTCATGGCCTTxxxxxxGAATACTGCTGGAGGTGCTTGGGATAATGCAAAGAAATACATAGAAAGTGGTGCTCTTGGTGGAAAAGGAAGTGAAGCTCACAAGGCAGCTATTACAGGAGACACAGTTGGAGATCCA

Fln Alignment:

sp_v1.1_unigene76410___VALVVTASLREMIKPGALAVVSPVLIGVSFKILGQYTDQPLLGAKVVASMLMFATVSGILMALxxNTAGGAWDNAKKYIESGA------LGGKGSEAHKAAITGDTVGDP
C0PRN4_______________VKISTDASLREMIPPGALVMLTPLIVGT------------LFGVETLSGVLAGALVSGVQVAIxxSNTGGAWDNAKKYIEAGASKAARELGPKGSDAHKAAVIGDTIGDP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain