SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene76402

Length: 466 nt

UniGene Fasta

>sp_v1.1_unigene76402
ATCAACGCAGAGTACATGGGGAGTAAAGGAAGAGTGACAAAGCATGATCTGGAGCATACGCTTAAGAAGATGGGAAAGGAGGGGTTGAAGTGGGGTGCTGTAGCTGGTGTATATACTGGAGTAGAATATGGAGTAGAAAGGATTCGTGGCAGGCGTGACTGGAAGAATGCTTTAANAAGTGGTGCTGTGACTGGAGCAGCCATGTCTTTCAGTGATAATCATTACAGCAGAGACAAGATGATAAAGGACGCCATTACAGAGAGCATAGCCACTGCTGCCGAATTCATAAGATATCTCACTGGAAAACTGTAGCTTTATGTGAGATATCTTATGAATTTAGTCCGTGAATCATGATACAATAAATGTTGAGCATTAATCTGCTTTCCATACATGCAGTACCTAGATTGTTTAAAATAAAGTATAATAGACTGACCAATGAATTAGAAGACCCAATGCTTCGCATTTG

Ace file of the UniGene sp_v1.1_unigene76402

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Tim17 domain containing protein	-	-	8.0e-17	25%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	amino acid selective channel protein	-	-	8.3611e-40	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24	IPR003397	-	8.3611e-40	77%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NKV8

Fln msg: your sequence is shorter than subject: 104 - 147

Fln protein: INAEYMGSKGRVTKHDLEHTLKKMGKEGLKWGAVAGVYTGVEYGVERIRGRRDWKNALKSGAVTGAAMSFSDNHYSRDKMIKDAITESIATAAEFIRYLTGKL*

Protein Length: 105

Fln nts: ATCAACGCAGAGTACATGGGGAGTAAAGGAAGAGTGACAAAGCATGATCTGGAGCATACGCTTAAGAAGATGGGAAAGGAGGGGTTGAAGTGGGGTGCTGTAGCTGGTGTATATACTGGAGTAGAATATGGAGTAGAAAGGATTCGTGGCAGGCGTGACTGGAAGAATGCTTTAAaAAGTGGTGCTGTGACTGGAGCAGCCATGTCTTTCAGTGATAATCATTACAGCAGAGACAAGATGATAAAGGACGCCATTACAGAGAGCATAGCCACTGCTGCCGAATTCATAAGATATCTCACTGGAAAACTGTAG___CTTTATGTGAGATATCTTATGAATTTAGTCCGTGAATCATGATACAATAAATGTTGAGCATTAATCTGCTTTCCATACATGCAGTACCTAGATTGTTTAAAATAAAGTATAATAGACTGACCAATGAATTAGAAGACCCAATGCTTCGCATTTG

Fln Alignment:

sp_v1.1_unigene76402___SKGRVTKHDLEHTLKKMGKEGLKWGAVAGVYTGVEYGVERIRGRRDWKNALKSGAVTGAAMSFSDNHYSRDKMIKDAIT-ESIATAAEFIRYLT
A9NKV8_______________SKGSVTKHDLEHTIKKMGIEGLKWGAVAGVYTGVEYGVERIRGRRDWKNALISGAVTGAAMSFGDNKYTRDKMIKDAITGGAIATAAEFIRYLT

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain