SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene76387

Length: 451 nt

UniGene Fasta

>sp_v1.1_unigene76387
CGTCGTGACCTTGGCTGTCACTCATGTTTGGCTGTAAATCGGCCAAGTGGACTTGTTCGACATAGTCGCAAGGATAGGAAACGATTTGGCTGAAATCAGCTAAAGTAAGACCTGTACAATGTCAGGCGGTGGCACACAACAGAGCCTGAGGAAGGCATTGGGTGCACTGAAAGATACAACGACAGTTAGTCTTGCCAAAGTGAACAGTGATTACAAGGATCTAGACATTGCTATTGTGAAGGCCACAAATCATGTTGAGCGGCCAGCAAAAGAAAGCATATCCGAAGTAGGTGGATGTCCTCTTTGTTGTTTCCCTGGAGTGCATATATGAAAGATCAGTAGGCATTTTTACATAACCTGCTTATATATCTTGAAAAACAATGCATAAACATTGCAATACGACTTCCAAGGGAGATGTATAGATTTAATGTCTGATGGTCTTTATTTTGGG

Ace file of the UniGene sp_v1.1_unigene76387

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Clathrin assembly protein, putative n=1 Tax=Ricinus communis RepID=B9T128_RICCO	-	-	9.0e-20	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Blast2go	protein	-	-	1.12499e-20	91%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	1.12499e-20	91%
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.12499e-20	91%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKD7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 435 aas, your sequence is shorter than subject: 71 - 547

Fln protein: MSGGGTQQSLRKALGALKDTTTVSLAKVNSDYKDLDIAIVKATNHVERPAKESISEVGGCPLCCFPGVHI*

Protein Length: 72

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTTTGGCTGTAAATCGGCCAAGTGGACTTGTTCGACATAGTCGCAAGGATAGGAAACGATTTGGCTGAAATCAGCTAAAGTAAGACCTGTACA_-_ATGTCAGGCGGTGGCACACAACAGAGCCTGAGGAAGGCATTGGGTGCACTGAAAGATACAACGACAGTTAGTCTTGCCAAAGTGAACAGTGATTACAAGGATCTAGACATTGCTATTGTGAAGGCCACAAATCATGTTGAGCGGCCAGCAAAAGAAAGCATATCCGAAGTAGGTGGATGTCCTCTTTGTTGTTTCCCTGGAGTGCATATATGAAAGATCAGTAGGCATTTTTACATAACCTGCTTATATATCTTGAAAAACAATGCATAAACATTGCAATACGACTTCCAAGGGAGATGTATAGATTTAATGTCTGATGGTCTTTATTTTGGG

Fln Alignment:

sp_v1.1_unigene76387___MSGGGTQQSLRKALGALKDTTTVSLAKVNSDYKDLDIAIVKATNHVERPAKE
B8LKD7_______________MSGGGTQQSLRKALGALKDTTTVSLAKVNSDYKDLDIAIVKATNHVERPAKE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain