SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene76363

Length: 439 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene76363
TTAACTTTCTTAGTTAAAAGTTCCTTAGTAAGGTATTTGTGCATGTGCCTTCTGAATTGTGCTCATGAAGTTGAGGAAATAGGTGTGGAGCACTTGCTAAGGGATGTCAAGGACACAACTATCAGTACTCTTGCAACAGAGGTGAGCGGGAAATTGACAGCATTGAAGGGTCTCGAGGCTCGGCTGAGGGAGATTCATGGATACTTGGATCTAGTAGTTGATGGAAGGCTTCCACTTAACCATGAAATTCTGTACCATCTTCAGGATGTATTCAATCTATTACCTAACTTGAATGTTAATGAGTTAGTGAAGGCTTTTGCAGTGAGTTGTTTTACCAGCTGCAGTCACAGGAACTAGATACTGCTCTTGCTTGGAACTTATTGGTAGCCAGCAGTTTCTTCCCTTTTATACGAGTACTGCATGCTGAAAAGTTCTGGCA

Ace file of the UniGene sp_v1.1_unigene76363

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pco082032; LOC100274928; K03038 26S proteasome regulatory subunit N8	-	-	2.0e-29	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%
Blast2go	protein	-	-	2.44348e-34	95%

Source	GOs	Term	Type	e value	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	2.44348e-34	95%
Blast2go	intracellular part	GO:0044424	Cellular Component	2.44348e-34	95%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NKL6

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 40 aas, putative chimeric sequence, your sequence is shorter than subject: 119 - 310

Fln protein: LTFLVKSSLVRYLCMCLLNCAHEVEEIGVEHLLRDVKDTTISTLATEVSGKLTALKGLEARLREIHGYLDLVVDGRLPLNHEILYHLQDVFNLLPNLNVNELVKAFAVSCFTSCSHRN*

Protein Length: 120

Fln nts: TTAACTTTCTTAGTTAAAAGTTCCTTAGTAAGGTATTTGTGCATGTGCCTTCTGAATTGTGCTCATGAAGTTGAGGAAATAGGTGTGGAGCACTTGCTAAGGGATGTCAAGGACACAACTATCAGTACTCTTGCAACAGAGGTGAGCGGGAAATTGACAGCATTGAAGGGTCTCGAGGCTCGGCTGAGGGAGATTCATGGATACTTGGATCTAGTAGTTGATGGAAGGCTTCCACTTAACCATGAAATTCTGTACCATCTTCAGGATGTATTCAATCTATTACCTAACTTGAATGTTAATGAGTTAGTGAAGGCTTTTGCAGTGAGTTGTTTTACCAGCTGCAGTCACAGGAACTAG___ATACTGCTCTTGCTTGGAACTTATTGGTAGCCAGCAGTTTCTTCCCTTTTATACGAGTACTGCATGCTGAAAAGTTCTGGCA

Fln Alignment:

sp_v1.1_unigene76363___CAHEVEEIGVEHLLRDVKDTTISTLATEVSGKLTALKGLEARLREIHGYLDLVVDGRLPLNHEILYHLQDXXXXXXXXXXXXXXKAFAV
A9NKL6_______________CAHEVEEIGVEHLLRDVKDTTISTLATEVSGKLTALKGLEARLREIHQYLDLVVDGRLPLNHEILYHLQDVFNLLPNLNVNELVKAFAV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain