SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene76361

Length: 337 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene76361
CGTGTGACCTTGGTGTCACTCAACTTCATCCAATTTGATCCAGCACCTCGTCAAATTGAACCTGATGCCACACGCAAGACTCGTGACCTTTTTGTCACTCGTTTTAGCACTAGAGGGATTTACCTTCTAGCTGTAAAGTTTTTATTATTGCCAGAAACTTCTTTTTTGAGAAATTCCAAGCATTCTTTATTTTGAGTTGGCTATTGTTTCCATTTCATAAGGATTAGTGGGATTTAATCCTTGCATTTATTATGGAGCAGAAAAGTAAGGGAAATAGTGGTAGAAGTGAAACTGACTTTATGTAAAGCAGACTGAGTGATTAGAAAGAAAAAGGCAT

Ace file of the UniGene sp_v1.1_unigene76361

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unknown EST	-	-	0.0	96%
FL-Next	sp=Serine/threonine-protein phosphatase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LR38

Fln msg: your sequence is shorter than subject: 65 - 306

Fln protein: RVTLVSLNFIQFDPAPRQIEPDATRKTRDLFVTRFSTRGIYLLAVKFLLLPETSFLRNSKHSLF*

Protein Length: 66

Fln nts: CGTGTGACCTTGGTGTCACTCAACTTCATCCAATTTGATCCAGCACCTCGTCAAATTGAACCTGATGCCACACGCAAGACTCGTGACCTTTTTGTCACTCGTTTTAGCACTAGAGGGATTTACCTTCTAGCTGTAAAGTTTTTATTATTGCCAGAAACTTCTTTTTTGAGAAATTCCAAGCATTCTTTATTTTGA___GTTGGCTATTGTTTCCATTTCATAAGGATTAGTGGGATTTAATCCTTGCATTTATTATGGAGCAGAAAAGTAAGGGAAATAGTGGTAGAAGTGAAACTGACTTTATGTAAAGCAGACTGAGTGATTAGAAAGAAAAAGGCAT

Fln Alignment:

sp_v1.1_unigene76361___NFIQFDPAPRQIEPDATRKTRDLFV
B8LR38_______________NFLQFDPAPRQIEPDATRKTPDYFL

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
123		50	50		1.0
124	33		66		0.997452
125			75	25	0.996477
126	75	25			0.996476
127			25	75	0.996478
129			25	75	0.996478
133			20	80	0.995498
137	75		25		0.996473
138		20	80		0.995499
141			80	20	0.995499
142			20	80	0.995499
143	75		25		0.996473
144	60	20		20	0.992609
145	50	25		25	0.995533
146	25		75		0.996473
149		20		80	0.995505
151		20		80	0.995505
152	20			80	0.995505

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain