SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene76172

Length: 567 nt

Origin of reads: Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene76172
CGTCGTGACCTTGGCTGTCACTCAGATTTTCATTTTGCCCGAGGTATCGGAGGAGTCACTTCGCAGGTATCTACGGAGCCAATTTTCGTGAAACTAAGCAGGTTGGAGAGCTTAATCGGAACGTTCTGTGGCTATATCAATTACCTAGAACCTTTATACGTTCGATCAATCTATTAAACGCACAGCATCAAAATTCGCAGGGGTATCACTGTTATTCAAAGAGTTGCAGTTAAAATTATGGCGGCTGATATGGCGAGGGAGGTAAAATTATGGAACGATAAACGCGAGCGTGAAATGTATGATAATTTCGCAGACCTCTTTGCAATCATAAGAACCATGGAGAAACTGGAGAAGGCCTATGTCCGTGACGTAATTTCCTCAAAAGATTACGAACCGGAATGCACAAAGCTGATTGCCCAATTTAAAACCCTAACAACCTCTCTGAAAGATACAGTCCCAAGCGTTGAGAGATTCATGGAAACCTACAAGATGGATTGCCCTGCTGCTATGAATCGCTTACTTGTTTCCGGGATTCCGGCCACCGTTGAACACAGGGCTTCATCATCA

Ace file of the UniGene sp_v1.1_unigene76172

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Vacuolar protein sorting-associated protein VPS28, putative; K12184 ESCRT-I complex subunit VPS28	-	-	9.99995e-41	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	99%
Blast2go	protein	-	-	0.0	88%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Vacuolar protein sorting-associated, VPS28	IPR007143	-	0.0	88%
Blast2go	Vacuolar protein sorting-associated, VPS28, N-terminal	IPR017898	-	0.0	88%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9P7

Fln msg: Distance to subject end: 102 aas, your sequence is shorter than subject: 110 - 212

Fln protein: MAADMAREVKLWNDKREREMYDNFADLFAIIRTMEKLEKAYVRDVISSKDYEPECTKLIAQFKTLTTSLKDTVPSVERFMETYKMDCPAAMNRLLVSGIPATVEHRASSS

Protein Length: 111

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGATTTTCATTTTGCCCGAGGTATCGGAGGAGTCACTTCGCAGGTATCTACGGAGCCAATTTTCGTGAAACTAAGCAGGTTGGAGAGCTTAATCGGAACGTTCTGTGGCTATATCAATTACCTAGAACCTTTATACGTTCGATCAATCTATTAAACGCACAGCATCAAAATTCGCAGGGGTATCACTGTTATTCAAAGAGTTGCAGTTAAAATT_-_ATGGCGGCTGATATGGCGAGGGAGGTAAAATTATGGAACGATAAACGCGAGCGTGAAATGTATGATAATTTCGCAGACCTCTTTGCAATCATAAGAACCATGGAGAAACTGGAGAAGGCCTATGTCCGTGACGTAATTTCCTCAAAAGATTACGAACCGGAATGCACAAAGCTGATTGCCCAATTTAAAACCCTAACAACCTCTCTGAAAGATACAGTCCCAAGCGTTGAGAGATTCATGGAAACCTACAAGATGGATTGCCCTGCTGCTATGAATCGCTTACTTGTTTCCGGGATTCCGGCCACCGTTGAACACAGGGCTTCATCATCA

Fln Alignment:

sp_v1.1_unigene76172___MAADMAREVKLWNDKREREMYDNFADLFAIIRTMEKLEKAYVRDVISSKDYEPECTKLIAQFKTLTTSLKDTVPSVERFMETYKMDCPAAMNRLLVSGIPATVEHRASSS
D5A9P7_______________MAADMAREVKLWNDKREREMYDNFADLFAIIRTMEKLEKAYVRDVISSKDYEPECTKLIAQFKTLTTSLKDTVPSVERFMETYKMDCPAAVNRLLVSGIPATVEHRASSS

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
39		83	16		0.994523
41		83		16	0.994523
47			80	20	0.995493
48		20	80		0.995493
49	20			80	0.995493
50	87		12		0.992554
132		37	62		1.0
249		83	16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain