SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene76054

Length: 213 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

>sp_v1.1_unigene76054
ATGGGGGGGGGTCCAGAGGTGTTCACCATAGAACAACTGGTCGTCTTGATGTTTGTGTCATTACTAGAAGACCCTCGTTTCATAAAAGTTCCTATCCCGATTGCTAGGCTTATTTCGTCACCCAGAGAGTTCTTACTGAACAAAGTACCATTTCCACTTCCAATACCTGAGGTCTTTAACCAGGATTACGTGGACTCACTTTTAGTTGATAAT

Ace file of the UniGene sp_v1.1_unigene76054

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	si946088d04; LOC100282690; K03953 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 9 [EC:1.6.5.3 1.6.99.3]	-	-	6.0e-17	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Blast2go	nadh-ubiquinone oxireductase	-	-	3.94069e-26	77%

Source	ECs	Term	Type	e value	Identity
AutoFact	NADH dehydrogenase (ubiquinone).	EC:1.6.5.3	-	6.0e-17	54%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Oxidative phosphorylation	00190		6.0e-17	54%
AutoFact	Metabolic pathways	01100		6.0e-17	54%
AutoFact	NADH dehydrogenase.	EC:1.6.99.3	-	6.0e-17	54%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Oxidative phosphorylation	00190		6.0e-17	54%
AutoFact	Metabolic pathways	01100		6.0e-17	54%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to salt stress	GO:0009651	Biological Process	3.94069e-26	77%
Blast2go	respiratory chain complex I	GO:0045271	Cellular Component	3.94069e-26	77%
Blast2go	mitochondrion	GO:0005739	Cellular Component	3.94069e-26	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUP2

Fln msg: Distance to subject end: 50 aas, your sequence is shorter than subject: 71 - 401

Fln protein: MGGGPEVFTIEQLVVLMFVSLLEDPRFIKVPIPIARLISSPREFLLNKVPFPLPIPEVFNQDYVDSLLVDN

Protein Length: 72

Fln nts: ATGGGGGGGGGTCCAGAGGTGTTCACCATAGAACAACTGGTCGTCTTGATGTTTGTGTCATTACTAGAAGACCCTCGTTTCATAAAAGTTCCTATCCCGATTGCTAGGCTTATTTCGTCACCCAGAGAGTTCTTACTGAACAAAGTACCATTTCCACTTCCAATACCTGAGGTCTTTAACCAGGATTACGTGGACTCACTTTTAGTTGATAAT

Fln Alignment:

sp_v1.1_unigene76054___GGPEVFTIEQLVVLMFVSLLEDPRFIKVPIPIARLISSPREFLLNKVPFPLPIPEVFNQDYVDSLLVDN
A9NUP2_______________GGPDVFTIDQLVHLMFEMIREEPRFIKIPIPIARLISSPREFLLNKVPFPLPTPEIFNQDYVDSLLADN

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
106		25		75	0.996476
110	75		25		0.996476
111	25		75		0.996476
112		25	75		0.996476
116	66		33		0.997452
117			33	66	0.997452
118		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain