SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene76034

Length: 645 nt

Origin of reads: Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene76034

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Small nuclear ribonucleoprotein-associated protein, putative n=2 Tax=Ricinus communis RepID=B9SV77_RICCO	-	-	3.0e-32	67%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	85%
Blast2go	protein	-	-	1.87172e-33	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	positive regulation of cell fate commitment	GO:0010455	Biological Process	1.87172e-33	90%
Blast2go	root cap development	GO:0048829	Biological Process	1.87172e-33	90%
Blast2go	Cajal body	GO:0015030	Cellular Component	1.87172e-33	90%
Blast2go	nucleolus	GO:0005730	Cellular Component	1.87172e-33	90%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Like-Sm ribonucleoprotein (LSM) domain	IPR001163	-	1.87172e-33	90%
Blast2go	Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type	IPR006649	-	1.87172e-33	90%
Blast2go	Like-Sm ribonucleoprotein (LSM)-related domain	IPR010920	-	1.87172e-33	90%

Full-Lengther Next Prediction

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
59		66		33	1.0
60	33		66		1.0
65	33		66		1.0
68		66		33	1.0
70	37			62	1.0
72		37	62		1.0
76			62	37	1.0
80		66		33	1.0
82		33		66	1.0
84	90		10		0.903076
90		10		90	0.903076
93	88			11	0.923564
97		11		88	0.923564
101	88	11			0.923564
102	11			88	0.923564
104		88		11	0.923564
398		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain