SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene76033

Length: 569 nt

Origin of reads: Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene76033
CCGTCGTGACCTTGGCTGTCACTCATCTGATGAGTTTTGGATCTGTTGTGATACGTGTAAGAAATGGTTCCATGGCAAGTGTCTTAAGATTACTCCTGCGATAGCCGAACACATTAAGCATTATAAATGTCCATCTTGCAGCAACAAAAGGCCCCGAATTTAATGGATGGCCGAGGGGATCTTTAATTCAACTTGACAGGTGATGACTATCTCTAATGTTTCTACCCAGTGGTTTCGGATGCAGAAGTGTCTGCAGCCCTTTTGGTTTGTTACTTGCACTTAGAAGGCTTAATTAGCTTCGTCTTGAGCTTGGCTGTCACAAGCTGAAAGCTGAATCTGTTGGAGGTGGTCAGTGTTTTTCATTCAGCCTAGGATGTTAGGAGAGATGGGTCTGATCCACAGACTTGGAAATGGGTTTGATCCACAGACCTAGTTCCTAGCTCTTGGATCTTCTCTGTTAGTGTTAGATAGATGTGTTGATTTACTTCTTGCTATTGTATCATTGTTGGGAAACCGTTTGTTCTACCGCTGTGTATGGACATATTGTGCTCAACAGTGCATTGTTAGAC

Ace file of the UniGene sp_v1.1_unigene76033

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PHD finger family protein n=3 Tax=Arabidopsis RepID=D7LQ37_ARALY	-	-	5.0e-19	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	phd finger family protein	-	-	2.12288e-20	91%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	2.12288e-20	91%
Blast2go	nucleus	GO:0005634	Cellular Component	2.12288e-20	91%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, PHD-type	IPR001965	-	2.12288e-20	91%
Blast2go	Zinc finger, FYVE/PHD-type	IPR011011	-	2.12288e-20	91%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	2.12288e-20	91%
Blast2go	Zinc finger, PHD-finger	IPR019787	-	2.12288e-20	91%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZI0

Fln msg: your sequence is shorter than subject: 54 - 262

Fln protein: RRDLGCHSSDEFWICCDTCKKWFHGKCLKITPAIAEHIKHYKCPSCSNKRPRI*

Protein Length: 55

Fln nts: CCGTCGTGACCTTGGCTGTCACTCATCTGATGAGTTTTGGATCTGTTGTGATACGTGTAAGAAATGGTTCCATGGCAAGTGTCTTAAGATTACTCCTGCGATAGCCGAACACATTAAGCATTATAAATGTCCATCTTGCAGCAACAAAAGGCCCCGAATTTAA___TGGATGGCCGAGGGGATCTTTAATTCAACTTGACAGGTGATGACTATCTCTAATGTTTCTACCCAGTGGTTTCGGATGCAGAAGTGTCTGCAGCCCTTTTGGTTTGTTACTTGCACTTAGAAGGCTTAATTAGCTTCGTCTTGAGCTTGGCTGTCACAAGCTGAAAGCTGAATCTGTTGGAGGTGGTCAGTGTTTTTCATTCAGCCTAGGATGTTAGGAGAGATGGGTCTGATCCACAGACTTGGAAATGGGTTTGATCCACAGACCTAGTTCCTAGCTCTTGGATCTTCTCTGTTAGTGTTAGATAGATGTGTTGATTTACTTCTTGCTATTGTATCATTGTTGGGAAACCGTTTGTTCTACCGCTGTGTATGGACATATTGTGCTCAACAGTGCATTGTTAGAC

Fln Alignment:

sp_v1.1_unigene76033___HSSDEFWICCDTCKKWFHGKCLKITPAIAEHIKHYKCPSCSNKRPRI
A9NZI0_______________YASDEFWICCDMCEKWFHGKCVKITPARAEHIKHYKCPSCSNKRPRV

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
157	66			33	0.997461
158	66	33			0.997458
159			33	66	0.997476
161			33	66	0.997476
165	66			33	0.997471
177		33	66		0.997476
178	33		66		0.997476
287	66	33			0.997452
304	50			50	1.0
305	50	50			1.0
306			50	50	1.0
308	50		50		1.0
310		50	50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain