SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene75997

Length: 349 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene75997
CGTCGTGACCTTGGCTGTCACTCAATTTTGACTGACGCCCTCTGAAACCTGCTTTGGGGTTGTTGTGATTTGTAGGTATTTCAGTTTCAATCGTTGAAGGTGGAAGAGTCCTCCTTCCGGTCAATATGAATCCGAACATCGCTTGGCCCAGTATGTTCAAGGCAAATCCCTCAAGATCTCAGAGTCAAAGGGGTGAAGCTTCAATTCCTTCAGCGATTTCCTGCCAGAGACAATCTTGTGAAGGCATATCATCAGAGAGTGAGGAAAGGAATCAGCGGGAATCAAAGCCCAGATGGAATCCAAAACCAGAACAGATCCGGGTTTTACAGTCCATCTTTAACTCTGGGGT

Ace file of the UniGene sp_v1.1_unigene75997

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative wuschel homeobox protein WOX8/9 n=1 Tax=Picea abies RepID=D5LMH9_PICAB	-	-	6.0e-13	52%
FL-Next	tr=Putative wuschel homeobox protein WOX8/9; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	60%
Blast2go	wuschel homeobox protein wox8 9	-	-	1.13656e-12	72%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5LMH9

Fln msg: Distance to subject end: 199 aas, your sequence is shorter than subject: 74 - 274

Fln protein: MNPNIAWPSMFKANPSRSQSQRGEASIPSAISCQRQSCEGISSESEERNQRESKPRWNPKPEQIRVLQSIFNSG

Protein Length: 75

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTGACTGACGCCCTCTGAAACCTGCTTTGGGGTTGTTGTGATTTGTAGGTATTTCAGTTTCAATCGTTGAAGGTGGAAGAGTCCTCCTTCCGGTCAAT_-_ATGAATCCGAACATCGCTTGGCCCAGTATGTTCAAGGCAAATCCCTCAAGATCTCAGAGTCAAAGGGGTGAAGCTTCAATTCCTTCAGCGATTTCCTGCCAGAGACAATCTTGTGAAGGCATATCATCAGAGAGTGAGGAAAGGAATCAGCGGGAATCAAAGCCCAGATGGAATCCAAAACCAGAACAGATCCGGGTTTTACAGTCCATCTTTAACTCTGGGGT

Fln Alignment:

sp_v1.1_unigene75997___MNPNIAWPSMFKANPSRSQSQRGEASIPSAISCQRQSCEGIXXXXXXXXXXXXKPRWNPKPEQIRVLQSIFNSG
D5LMH9_______________MNLKEHWPSMFKVKPSTSNNQWHETSNSSAISGERPSYEGSTSENEERSPPEPKPRWNPKPEQLRILESVFNSG

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
108	20		80		0.995493
117			14	85	0.993535
124		85	14		0.993535
126	85	14			0.993535
127		16		83	0.994512
128	83			16	0.994512
131	85		14		0.993533
132	85	14			0.993533
135		85	14		0.993533
136			85	14	0.993533
137	85	14			0.993533
143		12	75		0.975346
144	14	85			0.993533
177			85	14	0.993533
183	85		14		0.993533
191	85			14	0.993533
196			12	87	0.992555
207	28			71	1.0
214	85		14		0.993533
224			14	85	0.993533
261	14		85		0.993533
270		14	85		0.993541
273	83		16		0.994512
279	28		71		1.0
322			66	33	0.997476

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain