SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene75983

Length: 562 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene75983
CGTCGTGACCTTGGCTGTCACTCAGGCAATGTTTGTGTTGCATCATTTGATTGGACTTGCAGTGGAATCTGTAAATCTGTTGAAAGGTTAAAAGAGGTGCATCGTACCTGCAGTGAAGGAGATGGCGCAGTGTGGAACACATTCGTCGTGACCTTGGCTGTCACTCATTATTTATGGCATGCTTCTCCCTTAAAGAAACTTTGCAATGAGATTGACACGTATATAAAGAGCCATCAAGTCAACATAGTTTTTTGATAACTTTCAAAATGGTGTTCTTAACAGGAATAGGTAATGGTTAGTGGTGAAAATAGAGATAGGATTAGAAATTATGTGGAAGAAGAATGAAAGAATAATTCTTATTTTGGAGGTTTTGATTCTTGGCAAATCTCCATGTAAACGACCAAATTTCTGGGTAGTCACTCAGAATCCAGATTTGTCAGTGAGGCCTGGTTATGCTTGCTTTAATTTATTGTTAATACGATGCACAGCTCAGTTGAGTTGCAGTTGTTGAGGGCTTTGCCAATAATACAGATTGCAGAGGCAAATTGAAGCAGATTTTTGC

Ace file of the UniGene sp_v1.1_unigene75983 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	galactosyltransferase family protein	-	-	1.79506e-16	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	beta-1,3-galactosyltransferase activity	GO:0048531	Molecular Function	1.79506e-16	89%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	1.79506e-16	89%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycosyl transferase, family 31	IPR002659	-	1.79506e-16	89%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A8P6

Fln msg: your sequence is shorter than subject: 85 - 246

Fln protein: RRDLGCHSGNVCVASFDWTCSGICKSVERLKEVHRTCSEGDGAVWNTFVVTLAVTHYLWHASPLKKLCNEIDTYIKSHQVNIVF*

Protein Length: 86

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGCAATGTTTGTGTTGCATCATTTGATTGGACTTGCAGTGGAATCTGTAAATCTGTTGAAAGGTTAAAAGAGGTGCATCGTACCTGCAGTGAAGGAGATGGCGCAGTGTGGAACACATTCGTCGTGACCTTGGCTGTCACTCATTATTTATGGCATGCTTCTCCCTTAAAGAAACTTTGCAATGAGATTGACACGTATATAAAGAGCCATCAAGTCAACATAGTTTTTTGA___TAACTTTCAAAATGGTGTTCTTAACAGGAATAGGTAATGGTTAGTGGTGAAAATAGAGATAGGATTAGAAATTATGTGGAAGAAGAATGAAAGAATAATTCTTATTTTGGAGGTTTTGATTCTTGGCAAATCTCCATGTAAACGACCAAATTTCTGGGTAGTCACTCAGAATCCAGATTTGTCAGTGAGGCCTGGTTATGCTTGCTTTAATTTATTGTTAATACGATGCACAGCTCAGTTGAGTTGCAGTTGTTGAGGGCTTTGCCAATAATACAGATTGCAGAGGCAAATTGAAGCAGATTTTTGC

Fln Alignment:

sp_v1.1_unigene75983___SGNVCVASFDWTCSGICKSVERLKEVHRTCSEGDGAVWNTFV
D5A8P6_______________AGNVCVASFDWTCSGICKSVERLKEVHRTCSEGDGAVWSTLI

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
106	16		83		0.994513
139	16		83		0.994512
403	25		75		0.996486
404	75			25	0.996483
405	25		75		0.996483
412	25	75			0.996475
413		75	25		0.996474
414	75		25		0.996474
417	25		75		0.996483
422	25		75		0.99649
424		75		25	0.99649
425			75	25	0.99649

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain