SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene75915

Length: 544 nt

Origin of reads: Biogeco_1

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene75915
ATGGGGACGGCAGAGAACTTCCGAGCACTCTGCACCGGTGAGATTGGCGTGGGGAAATCCGGCAAGCCTCTGCACTACAAGGGATCCACGTTCCACCGTGTGATCCCTGGCTTCATGTGCCAGGGAGGGGATTTCACCGCCGCAAACGCCGGGAAGAATACCAATGGATCGCAGTTCTTTATCTGTACTGCAAAGACAGAGTGGCTGGACGGGAAACATGTGGTGTTCGGTCAGGTGGTGGAGGGCCTTGATATTGTCAAGGCCATCGAGGGTGTGGGATCCTCCAGTGGCAGGACTTCCAAGCCCGTAGTAATTGCTGACTGCGGTCAGCTCTGAACTGCGCTTTAATAATTACTATGGTTAGGTTAGGAAAATTTACGAGTTTACTGTTGTGTTGTAATAAGGGTTTCGAGCGGCATGGCCACCCCTGACACCTTTTATCGTATATGTTGCGTATATTCGTCTTTTAAGTGACTAACGACGACTCTTGTGGAGTCGTGGGACTAGCTTATATTTCCATGGGATACTCTCACATTTGAAATCT

Ace file of the UniGene sp_v1.1_unigene75915 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peptidyl-prolyl cis-trans isomerase n=1 Tax=Lupinus luteus RepID=CYPH_LUPLU	-	-	9.80909e-45	65%
FL-Next	sp=Peptidyl-prolyl cis-trans isomerase; Pinus taeda (Loblolly pine).	-	-	0.0	76%
Blast2go	cyclophilin 11	-	-	2.38221e-44	64%

Source	ECs	Term	Type	e value	Identity
Blast2go	Peptidylprolyl isomerase.	EC:5.2.1.8	-	2.38221e-44	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	peptidyl-prolyl cis-trans isomerase activity	GO:0003755	Molecular Function	2.38221e-44	64%
Blast2go	membrane fraction	GO:0005624	Cellular Component	2.38221e-44	64%
Blast2go	multivesicular body	GO:0005771	Cellular Component	2.38221e-44	64%
Blast2go	Golgi stack	GO:0005795	Cellular Component	2.38221e-44	64%
Blast2go	cytosol	GO:0005829	Cellular Component	2.38221e-44	64%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	2.38221e-44	64%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain	IPR002130	-	2.38221e-44	64%
Blast2go	Cyclophilin-like	IPR015891	-	2.38221e-44	64%
Blast2go	Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site	IPR020892	-	2.38221e-44	64%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A5HIY2

Fln msg: your sequence is shorter than subject: 112 - 171

Fln protein: MGTAENFRALCTGEIGVGKSGKPLHYKGSTFHRVIPGFMCQGGDFTAANAGKNTNGSQFFICTAKTEWLDGKHVVFGQVVEGLDIVKAIEGVGSSSGRTSKPVVIADCGQL*

Protein Length: 113

Fln nts: ATGGGGACGGCAGAGAACTTCCGAGCACTCTGCACCGGTGAGATTGGCGTGGGGAAATCCGGCAAGCCTCTGCACTACAAGGGATCCACGTTCCACCGTGTGATCCCTGGCTTCATGTGCCAGGGAGGGGATTTCACCGCCGCAAACGCCGGGAAGAATACCAATGGATCGCAGTTCTTTATCTGTACTGCAAAGACAGAGTGGCTGGACGGGAAACATGTGGTGTTCGGTCAGGTGGTGGAGGGCCTTGATATTGTCAAGGCCATCGAGGGTGTGGGATCCTCCAGTGGCAGGACTTCCAAGCCCGTAGTAATTGCTGACTGCGGTCAGCTCTGA___ACTGCGCTTTAATAATTACTATGGTTAGGTTAGGAAAATTTACGAGTTTACTGTTGTGTTGTAATAAGGGTTTCGAGCGGCATGGCCACCCCTGACACCTTTTATCGTATATGTTGCGTATATTCGTCTTTTAAGTGACTAACGACGACTCTTGTGGAGTCGTGGGACTAGCTTATATTTCCATGGGATACTCTCACATTTGAAATCT

Fln Alignment:

sp_v1.1_unigene75915___TAENFRALCTGEIGVGKSGKPLHYKGSTFHRVIPGFMCQGGDFTA-------------------------------ANAGKNTNGSQFFICTAKTEWLDGKHVVFGQVVEGLDIVKAIEGVGSSSGRTSKPVVIADCGQL
A5HIY2_______________TAENFRALCTGEIGVGKSGKPLHYKGSAFHRVIPGFMCQGGDFTAGNGTGGESIYGNKFPDENFVKKHTGPGILSMANAGKNTNGSQFFICTAKTEWLDGKHVVFGQVVEGLDVVKAIEGVGSSSGRTSKPVVIADCGQL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain