SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene75867

Length: 398 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene75867
CGTCGTGACCTTGGCTGTCACTCAGTTATTAACGTCGTGACCTTGGCTGTCACTCAGGGTTCATGAATGGTATGTTGAATGCATCATTAACACCACCATAAATACCATAAATGGAGGCAGAGGCCATTCACGATTGTCGTTGTGAATAGTGAATTAGGGTCTCTGCCGTTAGTGCTTCCACTGCGCCAACGCCATGCCTCCATTGTCATCGAAGGCCATGCCTCTCGGATCCCCAGCCTCTGATTTTGAGCTGCCGGAACCTCTCACTGGCAAGGTTTGGAAATTGGCTGACTTTGAAGGACATCCCGCACTGCTGGTGACGTTCATCTGCAATCACTGCCCATTTGTTGTGCATTTGAAGAAGGACATTGTCAAGCTTGCAAATGATTACATGCCAA

Ace file of the UniGene sp_v1.1_unigene75867

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AhpC-TSA domain containing protein	-	-	2.0e-05	28%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	electron carrier oxidoreductase	-	-	4.16999e-31	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	4.16999e-31	79%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant	IPR000866	-	4.16999e-31	79%
Blast2go	Thioredoxin fold	IPR012335	-	4.16999e-31	79%
Blast2go	Thioredoxin-like fold	IPR012336	-	4.16999e-31	79%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NPM4

Fln msg: Distance to subject end: 125 aas, your sequence is shorter than subject: 68 - 193

Fln protein: MPPLSSKAMPLGSPASDFELPEPLTGKVWKLADFEGHPALLVTFICNHCPFVVHLKKDIVKLANDYMP

Protein Length: 69

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTATTAACGTCGTGACCTTGGCTGTCACTCAGGGTTCATGAATGGTATGTTGAATGCATCATTAACACCACCATAAATACCATAAATGGAGGCAGAGGCCATTCACGATTGTCGTTGTGAATAGTGAATTAGGGTCTCTGCCGTTAGTGCTTCCACTGCGCCAACGCC_-_ATGCCTCCATTGTCATCGAAGGCCATGCCTCTCGGATCCCCAGCCTCTGATTTTGAGCTGCCGGAACCTCTCACTGGCAAGGTTTGGAAATTGGCTGACTTTGAAGGACATCCCGCACTGCTGGTGACGTTCATCTGCAATCACTGCCCATTTGTTGTGCATTTGAAGAAGGACATTGTCAAGCTTGCAAATGATTACATGCCAA

Fln Alignment:

sp_v1.1_unigene75867___MPPLSSKAMPLGSPASDFELPEPLTGKVWKLADFEGHPALLVTFICNHCPFVVHLKKDIVKLANDYMP
A9NPM4_______________MPPLESKTMPLGSTAPDFELPEPLTGKVWKLADFEGHPALLVTFICNHCPFVVHLKKDIVKLANDYIP

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
94	87			12	0.992556
95		87	12		0.992555
96	87		12		0.992555
97		87	12		0.992555
98		87	12		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain