SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene75842

Length: 1179 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene75842

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cytosolic aldehyde dehydrogenase n=1 Tax=Oryza sativa Japonica Group RepID=Q9LRE9_ORYSJ	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	79%
Blast2go	cytosolic aldehyde dehydrogenase	-	-	77%

Source	InterPros	Term	Type	Identity
Blast2go	Aldehyde dehydrogenase domain	IPR015590	-	77%
Blast2go	Aldehyde dehydrogenase, conserved site	IPR016160	-	77%
Blast2go	Aldehyde/histidinol dehydrogenase	IPR016161	-	77%
Blast2go	Aldehyde dehydrogenase, N-terminal	IPR016162	-	77%
Blast2go	Aldehyde dehydrogenase, C-terminal	IPR016163	-	77%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLF5

Fln msg: your sequence is shorter than subject: 337 - 500

Fln protein: VVTLAVTQIIPWNFPLLMFFSKVSPALACGCTVVIKSAEQTPLTALYCAQLASEAGIPPGSLNVLSGFGKTAGAAMSSHMDIDKISFTGSTQVGRLIMEAAAKSNLKPVTLELGGKSPPIVMEDADIDEAVDIAHLAVFSNMYVVQESIYDEFVKKAVERAKKQVVGDPFKSGVHQGPQIDKLQFEKVLKYIQYGKEEGANLVTGGSSLGGPGFYIETTIFSDVQDDMKIAQDEIFGPVMSILKFKTIDEAIERGNKTIYGLGAGIVTKNINVANRFTRSLRAGMVWINCYLLASGDCPMGGYKMSGIGREYGSNGLETYLQVKCVITSLQESPWL*

Protein Length: 338

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGATTATACCCTGGAACTTTCCATTGCTGATGTTTTTCTCTAAGGTCTCTCCTGCATTGGCCTGCGGATGTACAGTGGTTATCAAATCTGCAGAGCAGACTCCCTTAACCGCACTTTATTGTGCACAATTAGCCAGCGAGGCAGGAATACCCCCTGGGTCTCTTAATGTGCTCTCTGGCTTTGGTAAAACTGCTGGTGCTGCCATGAGCAGCCACATGGATATTGATAAGATATCATTTACAGGGTCAACTCAAGTTGGGCGACTTATTATGGAGGCTGCTGCAAAGAGCAACTTGAAGCCTGTGACATTAGAATTGGGTGGAAAATCCCCTCCCATTGTTATGGAGGACGCTGATATTGATGAAGCTGTGGATATTGCCCATCTAGCAGTATTTAGCAACATGTATGTTGTTCAAGAAAGCATTTATGATGAATTTGTGAAGAAAGCAGTGGAAAGAGCAAAGAAGCAAGTGGTCGGAGACCCTTTTAAGTCTGGGGTCCATCAAGGCCCTCAGATCGACAAGTTGCAATTTGAAAAAGTGCTGAAATATATTCAATATGGAAAAGAGGAAGGAGCTAATTTAGTGACTGGAGGTAGCTCTTTAGGTGGTCCAGGATTTTATATTGAAACTACAATATTCTCAGATGTTCAGGATGATATGAAGATTGCACAAGATGAAATTTTTGGACCAGTCATGTCTATTTTGAAATTCAAGACTATAGATGAAGCCATAGAAAGAGGAAATAAAACCATTTACGGTTTGGGAGCTGGAATTGTTACTAAAAACATAAATGTGGCTAATAGATTTACTAGATCTTTGCGTGCTGGAATGGTATGGATCAATTGTTACCTTCTAGCGAGTGGAGACTGTCCAATGGGTGGATACAAGATGAGCGGAATTGGGAGAGAATATGGATCTAATGGCCTTGAAACTTATTTACAAGTCAAATGTGTCATTACTTCACTTCAAGAATCTCCTTGGTTATAA___GAGCTTCTTATGACTTTTTATGTGATTTACATTTGTCGACGCCTTTCGAACCAGCTAGTGTGGTTCATCCTCAGGACAAGTTGAAGAAACAGATCCAGCTTAGCATGATAAGTAGTCTGAACAGAGTCTCCAACGGTTAGATTGACTAAATAAATTTATATTATATT

Fln Alignment:

sp_v1.1_unigene75842___VTQIIPWNFPLLMFFSKVSPALACGCTVVIKSAEQTPLTALYCAQLASEAGIPPGSLNVLSGFGKTAGAAMSSHMDIDKISFTGSTQVGRLIMEAAAKSNLKPVTLELGGKSPPIVMXXXXXXXXXXXXHLAVFSNM---------YVVQESIYDEFVKKAVERAKKQVVGDPFKSGVHQGPQIDKLQFEKVLKYIQYGKEEGANLVTGGSSLGGPGFYIETTIFSDVQDDMKIAQDEIFGPVMSILKFKTIDEAIERGNKTIYGLGAGIVTKNINVANRFTRSLRAGMVWINCYLLASGDCPMGGYKMSGIGREYGSNGLETYLQVKCVITSLQESPWL
B8LLF5_______________VGQMIPWNFPILTFFSKVSPALACGCTVVIKSAEQTPLTALYCAQLANEAGIPPGVLNVLSGFGETAGASISSHMDIDKISFTGSTQVGRLIMEAAAKSNLKPVTLEMGGKSPLIVMDDADVDKAVNIAHLAVYTNMGQVCLAGSRVFVQEGIYDEFVKKAVARAKQQVVGDPFQPGVQHGPQIDKMQFEKILKYIQYGKRDGANLVLGGNSLGNKGFYIEPTIFSDVEDDMQIAKEEIFGPIMSILKFKTIEEVIERGNKTIYGLGAGIITKDIDIANRLARSLRVGTVWINCYLVVGADVPLGGYKMSGIGREYGSYGLTNYLQVKCVISPLQHSPWL

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
616	33		66		0.999998
693	33		66		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain