SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene75835

Length: 545 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene75835
AGATCGCAAAAGTGCAACCTTTTTCCATGCCGAAAATAGGTTGCATTGGCCAGAAGGAGCATCTTCCAGAGATAGTATTGGCAGTTCGTATGTTTGCGCCCTCAGAAATTTGATCATGGAGCATGTGGACCATTCAGCTGGTCTACTTATAGACTTGCTGCAAGGACTTCTCAAGTTTGAGCCTTCTGAACGTTTAAAAGCTTCAGAAGCTTTGAGTCATCCATTCTTCTTAGAGGGATCCAAATTTCATAAATATGGTGCATAGAAATCATGAGAATTCTGATTCGCTGCATGGGACAATGTTGGATTGTTATCAACTTCGTTGGTCTCAGGTGCCAGGCATCATCGGACCCCAGGCTTCTGAACCAGGAGAACTTCGAGACATCCATTCTTCTAAGATAATGCTGTGTGCCTAACGATAATCCATTACAGCATAAAGTTTGGGCTCTCCCTGCATGAGACAAATAAGAGTGGGATTGACTTTGTTGGTCTCTGCCACAAGGGTCCCCAATCGAGTTCAAAACAGATGGGATATGTACTGGGTT

Ace file of the UniGene sp_v1.1_unigene75835

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AFC1; AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	-	-	3.0e-13	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Blast2go	protein kinase	-	-	9.96772e-14	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	mRNA processing	GO:0006397	Biological Process	9.96772e-14	76%
Blast2go	protein binding	GO:0005515	Molecular Function	9.96772e-14	76%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	9.96772e-14	76%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LL66

Fln msg: your sequence is shorter than subject: 88 - 459

Fln protein: DRKSATFFHAENRLHWPEGASSRDSIGSSYVCALRNLIMEHVDHSAGLLIDLLQGLLKFEPSERLKASEALSHPFFLEGSKFHKYGA*

Protein Length: 89

Fln nts: AGATCGCAAAAGTGCAACCTTTTTCCATGCCGAAAATAGGTTGCATTGGCCAGAAGGAGCATCTTCCAGAGATAGTATTGGCAGTTCGTATGTTTGCGCCCTCAGAAATTTGATCATGGAGCATGTGGACCATTCAGCTGGTCTACTTATAGACTTGCTGCAAGGACTTCTCAAGTTTGAGCCTTCTGAACGTTTAAAAGCTTCAGAAGCTTTGAGTCATCCATTCTTCTTAGAGGGATCCAAATTTCATAAATATGGTGCATAG___AAATCATGAGAATTCTGATTCGCTGCATGGGACAATGTTGGATTGTTATCAACTTCGTTGGTCTCAGGTGCCAGGCATCATCGGACCCCAGGCTTCTGAACCAGGAGAACTTCGAGACATCCATTCTTCTAAGATAATGCTGTGTGCCTAACGATAATCCATTACAGCATAAAGTTTGGGCTCTCCCTGCATGAGACAAATAAGAGTGGGATTGACTTTGTTGGTCTCTGCCACAAGGGTCCCCAATCGAGTTCAAAACAGATGGGATATGTACTGGGTT

Fln Alignment:

sp_v1.1_unigene75835___DRKSATFFHAENRLHWPEGASSRDSIGS-SYVCALRNLIMEHVDHSAGXXXXXXXXXXKFEPSERLKASEALSHPFFLE
B8LL66_______________DARSAKYFRHGTRLNFPEGASSRESIRAVKKLPRLRNLVMERADHSAGALIDLLQGLLKYEPSERLEAQEALRHPFFTE

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
324	11			88	0.923564
325		88		11	0.923564
327			12	87	0.992554
328		25	12	62	1.0
432		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain