SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene75826

Length: 840 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene75826

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	S-adenosylmethionine synthase 5 n=6 Tax=Embryophyta RepID=METK5_VITVI	-	-	93%
FL-Next	sp=S-adenosylmethionine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	s-adenosylmethionine synthetase	-	-	96%

Source	GOs	Term	Type	Identity
Blast2go	methionine metabolic process	GO:0006555	Biological Process	96%
Blast2go	response to cold	GO:0009409	Biological Process	96%
Blast2go	lignin biosynthetic process	GO:0009809	Biological Process	96%
Blast2go	cell wall	GO:0005618	Cellular Component	96%
Blast2go	plasma membrane	GO:0005886	Cellular Component	96%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNX2

Fln msg: Warning!, your query overlaps and the subject is separated, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 33 aas, your sequence is shorter than subject: 280 - 393

Fln protein: S*PWLSLMVFGEITTKADVDYEQIVRKTCREIGFISDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLxxxxHTVLISTQHDETVTNDQIAADLKEHVIKPVIPEKYLDENTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGW*AAVGGAFSGKDPTKVDRSGAYIVRQAAKSIVAAGLARRCLVQVSYAIGVPEPLSVFVDSYGTGSIPDKEILEIIKENFDFRPGMITINLDLKRGGNG

Protein Length: 281

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGGTTTTTGGTGAAATCACCACTAAGGCCGATGTCGACTATGAGCAGATTGTTCGCAAGACCTGCAGGGAGATTGGTTTCATTTCTGACGATGTGGGTCTTGATGCTGATCACTGCAAAGTGCTGGTTAATATTGAACAGCAGAGCCCTGACATTGCCCAGGGAGTTCATGGACACTTTACCAAGAGGCCTGAGGAGATTGGAGCTGGTGACCAGGGTCACATGTTTGGATATGCAACTGATGAGACCCCCGAGCTGATGCCCCTGACCCATGTGCTGGCTACCAAACTGxxxxxxxxxxxxCACACTGTTCTCATCTCCACTCAGCACGATGAGACAGTGACCAATGACCAGATTGCTGCAGATTTGAAGGAGCATGTGATAAAGCCGGTGATTCCTGAGAAGTACCTGGACGAGAATACCATATTCCACTTGAACCCGTCTGGTCGATTTGTGATCGGAGGGCCTCATGGAGATGCAGGCCTCACCGGCAGGAAGATTATTATTGATACTTATGGAGGGTGGTGAGCTGCTGTCGGTGGTGCATTCTCTGGGAAGGATCCCACTAAGGTGGACCGAAGTGGCGCATACATAGTTAGACAGGCTGCCAAGAGCATTGTTGCAGCTGGACTTGCAAGGAGATGCCTTGTGCAGGTGTCTTATGCCATCGGAGTACCGGAGCCTCTGTCTGTCTTTGTTGATTCGTATGGTACAGGGAGCATTCCAGACAAGGAAATTCTGGAGATAATTAAAGAGAACTTTGATTTCAGGCCTGGCATGATCACGATCAACCTTGATCTGAAGAGAGGAGGAAATGGG

Fln Alignment:

sp_v1.1_unigene75826___LMVFGEITTKADVDYEQIVRKTCREIGFISDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGARxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxERVHTVLISTQHDETVTNDQIAADLKEHVIKPVIPEKYLDENTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGW*AAVGGAFSGKDPTKVDRSGAYIVRQAAKSIVAAGLARRCLVQVSYAIGVPEPLSVFVDSYGTGSIPDKEILEIIKENFDFRPGMITINLDLKRGGNG
B8LNX2_______________VMVFGEITTKADIDYEQIVRKTCREIGFISDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGAKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxERVHTVLISTQHDETVTNDQIAADLKEHVIKPVIPEKYLDENTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVAAGLARRCLVQVSYAIGVPEPLSVFVDSYGTGSIPDKEILELIKENFDFRPGMITINLDLKRGGNG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain