SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene75813

Length: 1299 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene75813 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative cysteine protease 2 n=1 Tax=Iris x hollandica RepID=Q6RCL8_IRIHO	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	cysteine proteinase	-	-	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMA7

Fln msg:

Fln protein: MGPIHIISLHTPANLIVFSIMGSVSRAYLLLFYMALWALLANALDSSFGFTDEDLNSEESLRGLYDKWALQHRSTRSLNSDEHAKRFEIFKENVKYIDSVNKQDGLYKLGLNKFADLSNEEFKAMHMTTRMEKHKSLRRDRGTQSGSFMYQNSTSLPESIDWRKKGAVTPVKNQGQCGSCWAFSTVAAVESINYIKTGKLVSLSEQQLVDCSKENAGCNGGLMDYAFQYIIDNGGISTEDAYPYTAEAGECSTTKIKSKATTIVIDGFEDVPSNNEEALKKAVAHQPVSVAIEASGRDFQFYLKGVFTGKCGTELDHGVVVVGYGKTSEGINYWIVRNSWGDEWGEKGYIRMSRNIKATEGKCGIAMQASYPIMKAKALDFELYVDHISDEL*

Protein Length: 394

Fln nts: _-_ATGGGACCCATTCACATTATTTCGCTGCATACTCCTGCGAATTTGATTGTTTTTTCCATAATGGGAAGTGTTTCTAGGGCATATCTGTTACTGTTCTACATGGCCCTGTGGGCTTTATTAGCGAACGCCTTGGATTCTTCGTTTGGATTTACAGACGAGGATCTCAACTCTGAAGAAAGCCTTCGAGGGCTTTATGATAAGTGGGCACTTCAGCATCGCTCCACCAGAAGTTTGAATTCGGATGAGCATGCCAAAAGATTCGAGATATTCAAAGAGAATGTGAAATACATCGACTCTGTGAATAAGCAGGATGGTCTATACAAACTTGGATTGAATAAGTTTGCAGATCTGAGTAATGAAGAATTCAAGGCCATGCATATGACAACTAGAATGGAGAAGCACAAGAGTCTGCGCCGAGACAGAGGAACACAGAGTGGATCATTCATGTACCAAAATTCCACGAGCCTGCCAGAGTCGATTGACTGGAGGAAAAAGGGAGCGGTAACTCCTGTGAAGAACCAAGGCCAATGTGGAAGTTGTTGGGCATTTTCAACTGTAGCTGCTGTAGAGAGCATTAACTATATTAAAACAGGGAAGCTGGTTTCTTTATCAGAGCAACAGTTGGTAGATTGCAGTAAAGAGAACGCAGGTTGCAACGGAGGGCTTATGGACTATGCCTTCCAATATATAATAGATAATGGAGGCATCTCTACTGAAGATGCGTATCCTTATACTGCCGAAGCGGGCGAGTGCAGTACAACCAAGATTAAATCGAAAGCAACAACAATAGTTATTGATGGCTTCGAAGATGTCCCTTCAAACAATGAAGAAGCTCTCAAGAAAGCAGTGGCTCATCAACCAGTGTCTGTAGCCATTGAAGCAAGTGGACGAGATTTCCAATTCTATTTAAAGGGAGTATTCACTGGTAAATGTGGCACTGAACTTGATCATGGAGTTGTAGTGGTGGGGTATGGCAAGACTTCTGAAGGAATCAATTACTGGATAGTTAGAAACTCTTGGGGAGATGAATGGGGAGAAAAAGGATATATAAGAATGAGTCGAAATATTAAGGCGACTGAAGGTAAGTGTGGTATTGCCATGCAAGCATCATATCCAATCATGAAGGCTAAAGCTCTTGATTTTGAATTATATGTTGATCACATTAGTGATGAACTATAA___CTATTGTCACAACAAAAAACTGTATTCCAAGGTTAAAAAAATGAAGATTCTTTCTTCATTTATGTGTAATTAAGTTTGGCTATGATATTATATTATTGTATCGATGATAGCTACTTTTCT

Fln Alignment:

sp_v1.1_unigene75813___MGSVSRXXXXXXXXXXXXXXANALDSSFGFTDEDLNSEESLRGLYDKWALQHRSTRSLNSDEHAKRFEIFKENVKYIDSVNKQDGLYKLGLNKFADLSNEEFKAMHMTTRMEKHKSLRRDRGTQSGSFMYQNSTSLPESIDWRKKGAVTPVKNQGQCGSCWAFSTVAAVESINYIKTGKLVSLSEQQLVDCSKENAGCNGGLMDYAFQYIIDNGGISTEDAYPYTAEAGECXXXXXXXXXXXIVIDGFEDVPSNNEEALKKAVAHQPVSVAIEASGRDFQFYLKGVFTGKCGTELDHGVVVVGYGKTSEGINYWIVRNSWGDEWGEKGYIRMSRNIKATEGKCGIAMQASYPIMKAKALDFELYVDHISDEL
B8LMA7_______________MASVSKAALLLFLAALWTLSANALDSSPGFTDEELESDESLRGLYDKWALQHRSTRSLDSDEHARRFEIFKENVKHIDSVNKKDGPYKLGLNKFADLSNEEFKAMHMTTKMEKHKSLRGDRGVESGSFMYQNSKRLPASIDWRKKGAVTPVKNQGQCGSCWAFSTIASVEGINYIKTGKLVSLSEQQLVDCSKENAGCNGGLMDNAFQYIIDNGGIVTEDEYPYTAEAGECSTTKIESKSIATIIDGFEDVPANNEGALKKAVAHQPVSIAIEASGHDFQFYSTGVFTGKCGTELDHGVVVVGYGKSPEGINYWIVRNSWGPEWGEQGYIRMQRGIEATEGKCGISMQASYPTKKTQDVDIELDVDHISDEL

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
360		25		75	0.996473
378	75	25			0.996473
457	11		88		0.923566
469		11	88		0.923564
471	11			88	0.923564
483	12			87	0.992554
484	12		87		0.992554
498	12		87		0.992554
589	83	16			0.994512
590		16	83		0.994512
591		16		83	0.994512
593			83	16	0.994512
745		50		50	1.0
772	80	20			0.995493
865		20		80	0.995493
903	20		80		0.995493
910		80	20		0.995493
1088	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain