SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene75802

Length: 1260 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene75802

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Expansin n=5 Tax=Pinaceae RepID=Q9SWY1_PINTA	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	alpha-expansin 8	-	-	88%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMF3

Fln msg:

Fln protein: MAPVTLATMFSLLWIAGAAFALDSGWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGATCGACYEMKCDHHSDPQWCLPATVTITATNLCPPNSALPNDNGGWCNPPLQHFDMAQPAFQQIAIYRSGIVPIMFRRVPCVRKGGVRFTINGHSYFNLVLITNVGGAGDVEAVSIKGSNTGWQAMSRNWGQNWQSNTYLNGQTLSFQVTVSDGRTITSYNVAPANWQFGQTFEGLQFNIVLHE*

Protein Length: 258

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCACTTCTCACCTCAGATATCAGTTCAGTTGAAGTCTATTTATCTTAAGCAACCGTAAA_-_ATGGCGCCTGTAACACTGGCCACGATGTTCAGTCTCTTGTGGATAGCTGGTGCGGCTTTTGCACTAGATAGTGGCTGGCAATCTGCACATGCTACGTTTTACGGTGGCAGCGATGCGTCGGGCACAATGGGCGGTGCGTGCGGATACGGTAACCTATATAGCCAAGGCTATGGAACGAACACTGCAGCTCTGAGCACGGCGCTTTTCAACAATGGCGCTACTTGCGGAGCCTGTTACGAAATGAAATGCGACCACCACTCCGACCCTCAGTGGTGTCTACCGGCCACTGTGACAATTACTGCTACTAACCTCTGCCCCCCTAACTCTGCTCTTCCCAACGACAATGGAGGATGGTGCAATCCACCTCTCCAACACTTCGACATGGCTCAGCCTGCGTTTCAACAGATCGCCATATACAGAAGTGGCATTGTTCCAATCATGTTCAGAAGAGTACCATGCGTGAGGAAAGGTGGAGTTCGATTCACGATCAATGGCCACTCCTATTTCAATTTGGTACTCATTACCAACGTAGGAGGTGCAGGCGATGTGGAGGCGGTTTCCATCAAAGGTTCCAACACTGGCTGGCAAGCAATGTCCCGCAACTGGGGACAGAATTGGCAGAGCAACACATATTTGAATGGGCAGACTCTCTCCTTCCAGGTCACCGTTAGCGATGGGAGAACCATCACATCCTATAACGTCGCTCCCGCAAATTGGCAATTCGGCCAGACATTTGAAGGACTGCAATTTAATATTGTGCTTCACGAATAG___TAACCCATAAGAAACGAAGCCGAGGTGATGCGAGAATATCACCCGCTTTCAAGTGGTTATTACTTCAAAAGTACAATAGGCAGTACTCCTAGTGTTGAAGTAGGGATACACAGATAGACGCCCGCTTCTGATTGTTGCTGCTGTATAGAATTGATATATACTTCGCGTATATCGTTGCGCTGAATTGGGACGGTGATATAATGTAAAAGTTGCATATTTCTCGTAAATTGAGTAAAATTTAAATGGTAGATTGGATGGTTTCACTGCTATCGTTGACGGCAGTTGCTGGAGATTTTCATGTCGTGCGTTGTCCACAAGCAATGCAGGTTAATTGAATTTGGTAGCTATCCTCTTTCGGGCAAATTGATTGAAGGAGTTTTACGTAATAATATATATTGGAGACAA

Fln Alignment:

sp_v1.1_unigene75802___MAPVTLATMFSLLWIAGAAFALDSGWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGATCGACYEMKCDHHSDPQWCLPATVTITATNLCPPNSALPNDNGGWCNPPLQHFDMAQPAFQQIAIYRSGIVPIMFRRVPCVRKGGVRFTINGHSYFNLVLITNVGGAGDVEAVSIKGSNTGWQAMSRNWGQNWQSNTYLNGQTLSFQVTVSDGRTITSYNVAPANWQFGQTFEGLQ
B8LMF3_______________MALLQLASVFCFWWIAGAAYALDSSWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLTCGACYEMKCNEETDPQWCLPGTVTVTATNFCPPNNALPNDNGGWCNPPLQHFDMAQPAYQQIAIYRGGIVPIMFRRVPCVRKGGVRFTINGHSYFNLVLITNVGGAGDVEAVSIKGSNSGWQAMSRNWGQNWQSNSYLNGQTLSFQVTTSDGRTVTSYNVAPANWQFGQTFEGLQ

SNPs (tot: 45)

Position	A %	C %	G %	T %	Probability
336		33	33	33	0.997753
337	33		66		1.0
338		33		66	1.0
341		75	25		0.996476
343		75	25		0.996476
345	25	25			0.995533
349		66		33	0.997452
351	66		33		0.997452
353		66		33	0.997452
354		66	33		0.997452
358		33	66		0.997452
361	33		66		0.997452
373		66	33		1.0
384	60		40		1.0
480	42		57		1.0
486			57	42	1.0
498		57		42	1.0
531		42	57		1.0
543	57	42			1.0
622		14	85		0.993533
624	85			14	0.993533
625		14	85		0.993533
631	85	14			0.993533
632			85	14	0.993533
633			85	14	0.993533
634		85	14		0.993533
636	85	14			0.993533
640		16	66		0.988813
641		16	83		0.994512
643		16	83		0.994512
644			83	16	0.994512
674		80		20	0.995493
720	66			33	0.997452
722	66	33			0.997452
726		33		66	0.997452
743		66	33		0.997452
752	33		66		0.997452
755		75		25	0.996473
757		75	25		0.99649
759	25		75		0.99649
760		33		66	0.997452
761		33		66	0.997452
782	66			33	0.997452
794		66	33		0.997452
800		50	25	25	0.995537

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain