SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene75801

Length: 746 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene75801 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L3-like	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	60s ribosomal protein	-	-	91%

Source	GOs	Term	Type	Identity
Blast2go	nucleolus	GO:0005730	Cellular Component	91%
Blast2go	vacuole	GO:0005773	Cellular Component	91%
Blast2go	plasma membrane	GO:0005886	Cellular Component	91%
Blast2go	cell wall	GO:0005618	Cellular Component	91%
Blast2go	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Blast2go	Ribosomal protein L3	IPR000597	-	91%
Blast2go	Translation elongation/initiation factor/Ribosomal, beta-barrel	IPR009000	-	91%
Blast2go	Ribosomal protein L3, conserved site	IPR019926	-	91%

Full-Lengther Next Prediction

SNPs (tot: 56)

Position	A %	C %	G %	T %	Probability
576	10		90		1.0
636		94	5		0.9982
638		5	94		0.998397
639		5		94	0.998397
642	5		2	83	0.999996
643	5			91	0.993509
644		88	8		1.0
645	12	87			1.0
646		87	12		1.0
647	12	77		9	1.0
648		77	9	12	1.0
650	85	11		3	1.0
653		7		88	0.999079
654		92	7		0.999664
655	19	80			1.0
656	15	76	7		1.0
657	3		11	80	1.0
659		32	8		1.0
660	46	30	23		1.0
662	60	24		16	1.0
663		87	4	8	0.999414
665		55		30	1.0
667			43	6	1.0
668	33	66			1.0
670	20	6	73		1.0
673		9	36	54	1.0
674	75		25		1.0
676		36		63	1.0
680	27	9		63	1.0
682	10		90		0.90298
683	14		85		0.993533
687		85		14	0.993535
689	14	85			0.993535
690		14		85	0.993535
693	85	14			0.993535
694			14	85	0.993535
695	66			33	1.0
697	33	66			1.0
698		66	33		1.0
700	66		33		1.0
701	33			66	1.0
703	33	66			1.0
704	66		33		1.0
706		33		66	1.0
707	33	66			1.0
710		66	33		1.0
711		66		33	1.0
715	66		33		1.0
718		66	33		1.0
739	75	25			0.996474
740	75	25			0.996474
741		25		50	0.995533
742	25	25	50		0.99554
743	75	25			0.996474
744		25	25		0.995539
745		33		66	0.997454

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain