SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene75790

Length: 1261 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene75790 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	glycosyl hydrolase family 17 protein	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	beta- -glucanase precursor	-	-	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	73%

Source	InterPros	Term	Type	Identity
Blast2go	Glycoside hydrolase, family 17	IPR000490	-	73%
Blast2go	X8	IPR012946	-	73%
Blast2go	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	73%
Blast2go	Glycoside hydrolase, superfamily	IPR017853	-	73%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: C0PPQ7

Fln msg: STOP codon was not found. Distance to subject end: 5 aas, your sequence is shorter than subject: 399 - 474

Fln protein: MSFRTSSVLIAIAVVLAIVASAGAGTVGINYGRVADNLPPASKVVQLIKSQGINKVKLYDADPAALHAFSGTDIKITIALPNEQLSNVARRPSRAYAWVQKNVVAYVPGTQITAIAVGNEVVADSNKLNSYLVPAMKNIHMALVKYNLDGIIKVSSPVATSVLQNSFPPSTGLFKSDLVETTIKPMLDFLSQTGSSLMVNVYPFFAYEGDANDISLDYALFRPNAGVRDSNTGVLYTNLFDAQLDAVFSAMSALGYKNLDIVVSEAGWPPKGDEDEIGANLDNAAAYNGNLVKHVLSNSVQHHRSSGTTPEGASETWCVANSKIDTSKLQAALDYACGEGAADCKQIQPGASCYNPNTLEAHASYAFNSYYQKNSRKTGTCDFQGAAYVVTQSPKYGDC

Protein Length: 400

Fln nts: ATGGGGAAAAGAAGTCGAAGAAAAAGAAAGAAGCTTGGTCGGTTATAGTTTCTTTGCTCAGC_-_ATGAGCTTCCGGACGAGTTCGGTGCTGATCGCGATTGCGGTGGTTCTGGCTATCGTTGCCTCTGCTGGGGCTGGCACTGTGGGTATCAACTATGGTCGCGTAGCAGACAATCTTCCGCCGGCTTCCAAGGTAGTGCAGCTGATTAAGAGCCAAGGCATCAACAAGGTGAAGCTCTACGACGCAGACCCTGCAGCTCTCCATGCATTCAGTGGTACCGACATTAAAATCACCATTGCCCTTCCCAATGAGCAACTGTCCAACGTTGCTCGTCGTCCTTCGCGAGCCTATGCCTGGGTCCAGAAGAACGTTGTTGCCTACGTTCCGGGCACCCAGATCACGGCCATAGCTGTTGGAAATGAAGTCGTCGCCGATTCTAATAAACTAAACTCCTACCTTGTCCCTGCCATGAAGAATATTCACATGGCTCTCGTCAAATATAACCTCGACGGAATTATCAAGGTGTCGAGCCCCGTTGCCACCAGTGTGCTCCAGAACTCTTTCCCACCATCAACCGGACTTTTCAAGAGCGACCTTGTGGAGACCACTATAAAGCCAATGCTCGATTTCCTGAGCCAAACGGGGTCCTCTCTCATGGTCAATGTCTACCCTTTCTTTGCCTACGAGGGCGACGCCAACGATATTTCTCTGGACTACGCACTCTTTCGCCCCAATGCCGGAGTCCGGGACAGCAACACCGGGGTCCTGTACACGAACCTCTTTGACGCACAGCTCGACGCAGTGTTCTCTGCAATGTCGGCCCTTGGGTATAAGAACCTCGACATTGTCGTGTCTGAGGCTGGGTGGCCACCTAAGGGCGACGAGGATGAAATCGGTGCTAACCTTGACAACGCTGCGGCCTATAATGGGAACCTCGTCAAGCATGTCCTCTCCAACTCTGTGCAGCATCATCGCAGCAGCGGGACAACCCCAGAAGGAGCATCCGAGACGTGGTGCGTTGCAAATTCCAAGATCGATACTAGTAAGCTCCAGGCGGCATTAGACTATGCATGTGGAGAAGGGGCTGCGGATTGCAAGCAGATTCAGCCCGGGGCGTCTTGCTACAACCCTAACACGCTCGAAGCCCATGCTTCATATGCTTTTAACAGTTATTATCAAAAGAACAGCCGCAAGACCGGAACCTGCGACTTCCAGGGCGCTGCTTATGTCGTTACCCAGTCTCCAAAGTATGGCGATTGCAA

Fln Alignment:

sp_v1.1_unigene75790___MSFRTXXXXXXXXXXXXXXXXXXXGTVGINYGRVADNLPPASKVVQLIKSQGINKVKLYDADPAALHAFSGTDIKITIALPNEQLSNVARRPSRAYAWVQKNVVAYVPGTQITAIAVGNEVVADSNKLNSYLVPAMKNIHMALVKYNLDGIIKVSSPVATSVLQNSFPPSTGLFKSDLVETTIKPMLDFLSQTGSSLMVNVYPFFAYEGDANDISLDYALFRPNAGVRDSNTGVLYTNLFDAQLDAVFSAMSALGYKNLDIVVSEAGWPPKGDEDEIGANLDNAAAYNGNLVKHVLSNS
C0PPQ7_______________MSFRTSSVLIGIVVALAIVASAGAGTVGINYGRVADNLPSAFKVVQLIKSQGIDKLKLYDADPSALRAFSGTGVKITIALPNEQLFYVARRLSRAYAWVKQNVVAYVPGTQITAIAVGNEVFVNPNNITSYLVPAMTNLHRALVKYNLDGIVKISSPVALSALQSSYPASSGAFKNELVESTIKPMLDFLRQTGSYLMVNAYPFFAYKDNADVISLDYALFRPNAGVPDGNTGLLYTNLFDAQLDAVFSAMSALGYKDLDIVVSETGWPSKGDEDETGVGLDNAAAYNGNLVKHVMSNS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1099		27		72	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain