SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene75662

Length: 409 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene75662
CGTCGTGACCTTGGCTGTCACTCAATTGTGATTGTTGTATTTCAGAGATCTTCTGTTAGACAACGAAAATATGGAGATCTGTTACGTCCCTTCTCTTTTCTGGTGCTGCCACCTACTCCTCTTTTATTTCATTCTCTTTGCCAATCCTTTTGTGTTTTCCACACCCATCGCCCATTTCTCTAATCCTCACCATCCTCGTCTCAACAACGCTTCTGATCAACACGCTCTGCTTGCATTCAAGTCTGCGATCACATATGATCCGTACCAATCGTTAGCCTCTACCTGGAAACCAAATATTTCATTCTGCGAGTGGACGGGTATCATATGCAGCAGGCGCAGACAGCGAGTCGTTTCCCTAAATGTTTCGCACATGGGATTACAAGAATATGGAGTGGGTGGACAAGTTACA

Ace file of the UniGene sp_v1.1_unigene75662

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Leucine Rich Repeat family protein [Oryza sativa (japonica cultivar-group)]	-	-	2.0e-08	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Blast2go	unknown [Picea sitchensis]	-	-	3.14091e-31	70%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	3.14091e-31	70%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NW30

Fln msg: Distance to subject end: 140 aas, your sequence is shorter than subject: 113 - 247

Fln protein: MEICYVPSLFWCCHLLLFYFILFANPFVFSTPIAHFSNPHHPRLNNASDQHALLAFKSAITYDPYQSLASTWKPNISFCEWTGIICSRRRQRVVSLNVSHMGLQEYGVGGQVT

Protein Length: 114

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTGTGATTGTTGTATTTCAGAGATCTTCTGTTAGACAACGAAAAT_-_ATGGAGATCTGTTACGTCCCTTCTCTTTTCTGGTGCTGCCACCTACTCCTCTTTTATTTCATTCTCTTTGCCAATCCTTTTGTGTTTTCCACACCCATCGCCCATTTCTCTAATCCTCACCATCCTCGTCTCAACAACGCTTCTGATCAACACGCTCTGCTTGCATTCAAGTCTGCGATCACATATGATCCGTACCAATCGTTAGCCTCTACCTGGAAACCAAATATTTCATTCTGCGAGTGGACGGGTATCATATGCAGCAGGCGCAGACAGCGAGTCGTTTCCCTAAATGTTTCGCACATGGGATTACAAGAATATGGAGTGGGTGGACAAGTTACA

Fln Alignment:

sp_v1.1_unigene75662___MEICYVPSLFWCCHLLLFYFILFANPFVFST-PIAHFSNPHHPRLNNASDQHALLAFKSAITYDPYQSLASTWKPNISFCEWTGIICSRRRQRVVSLNVSHMGLQEYGVGGQVT
A9NW30_______________MEICNVPSL------TRLLFILFLTPSIFSTLQLSHRRHPH-PRLGNASDQEPLLGFLSAITYDPSQNLTTTWTPNVSFCKWTGVICSRHRQRVVSLDVSYMGLEEYGLDGHVT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain